Table 1.
Species, strains and their corresponding GenBank accession numbers of sequences used for phylogenetic analyses.
| Species | Voucher/ culture Nos. | Origin | Substrate | GenBank accession No. | ||
|---|---|---|---|---|---|---|
| ITS | RPB2 | TEF1-a | ||||
| Trichoderma afarasin | CBS 130755 ET | Cameroon | Soil | AY027784 | AF348093 | |
| DIS 314F | Cameroon | Wood | FJ442259 | FJ442778 | FJ463400 | |
| GJS 06 98 | Cameroon | Soil | FJ442630 | FJ463327 | ||
| Trichoderma afroharzianum | CBS 124620 ET | Peru | Moniliophthora roreri | FJ442265 | FJ442691 | FJ463301 |
| CBS 466.94 | Netherlands | KP009262 | KP009150 | KP008851 | ||
| GJS 04-193 | Cameroon | Soil | FJ442233 | FJ442709 | FJ463298 | |
| Trichoderma aggressivum | CBS 100525 | UK | Mushroom compost | AF057600 | AF545541 | AF348095 |
| DAOM 222156 ET | Mushroom compost | AF456924 | FJ442752 | AF348098 | ||
| CBS 100526 | Ireland | Mushroom compost | FJ442607 | KP009166 | KP008993 | |
| Trichoderma alni | CBS 120633 ET | UK, England | Alnus glutinosa | EU518651 | EU498349 | EU498312 |
| CPK 2494 | EU518652 | EU498350 | EU498313 | |||
| HMAS 252890 | KT343763 | KT343758 | ||||
| Trichoderma alpinum | HMAS 248821 T | China, Sichuan | Soil | KY687906 | KY687958 | KY688012 |
| HMAS 248830 | KY687912 | KY687961 | KY688015 | |||
| HMAS 248870 | KY687953 | KY687963 | KY688017 | |||
| Trichoderma amazonicum | CBS 126898 ET | Peru | Hevea brasiliensis | HM142358 | HM142367 | HM142376 |
| IB95 | HM142359 | HM142368 | HM142377 | |||
| LA265 | HM142360 | HM142369 | HM142379 | |||
| Trichoderma atrobrunneum | GJS 05-101 | FJ442677 | FJ442745 | FJ463392 | ||
| GJS 90-254 | AF443926 | FJ442735 | AF443943 | |||
| Trichoderma atrogelatinosum | BMCC LU498 | New Zealand | KJ871087 | |||
| CBS 237.63 ET | New Zealand | MH858272 | KJ842201 | |||
| DAOM 167632 | KJ871083 | |||||
| Trichoderma bannaense | HMAS 248840 T | China, Yunan | Soil | KY687923 | KY687979 | KY688037 |
| HMAS 248865 | KY687948 | KY688003 | KY688038 | |||
| Trichoderma breve | HMAS 248844 T | China, Beijing | Soil | KY687927 | KY687983 | KY688045 |
| HMAS 248845 | KY687928 | KY687984 | KY688046 | |||
| Trichoderma brevicrassum | HMAS 248871 T | Soil | KY687954 | KY688008 | KY688064 | |
| HMAS 248872 | Soil | KY687955 | KY688009 | KY688065 | ||
| Trichoderma brunneoviride | CBS 120928 | EU518661 | EU498358 | EU498318 | ||
| CBS 121130 ET | EU518659 | EU498357 | EU498316 | |||
| Trichoderma camerunense | CBS 137272 ET | Cameroon | Soil | AY027780 | – | AF348107 |
| GJS 99 231 | AY027783 | AF348108 | ||||
| Trichoderma catoptron | DAOM 232830 | KJ842166 | KJ871245 | |||
| GJS 02 76 ET | Sri Lanka | Wood | AY737766 | AY737726 | ||
| Trichoderma ceramicum | CBS 114576 | FJ860743 | FJ860531 | FJ860628 | ||
| Trichoderma cerinum | BMCC LU784 | KJ871244 | ||||
| DAOM 230012 ET | Nepal | KC171336 | KJ842184 | KJ871242 | ||
| Trichoderma christiani | CBS 132572 ET | Spain | KJ665244 | KJ665439 | ||
| S93 | KJ665245 | KJ665442 | ||||
| Trichoderma cinnamomeum | GJS 96-128 | AY391916 | AY391977 | |||
| GJS 97-233 | AY391919 | AY391978 | ||||
| Trichoderma cinnamomeum | GJS 97-237 ET | USA, Missour | Decaying wood | AY737759 | AY391920 | AY737732 |
| Trichoderma compactum | CBS 121218 | AY941822 | KF134789 | KF134798 | ||
| Trichoderma concentricum | HMAS 248833 T | China, Hubei | Soil | KY687915 | KY687971 | KY688027 |
| HMAS 248858 | KY687941 | KY687997 | KY688028 | |||
| Trichoderma corneum | GJS 97-82 ET | Thailand | KJ665252 | KJ665455 | ||
| Trichoderma endophyticum | CBS 130729 ET | Ecuador | Theobroma gileri | FJ442243 | FJ463319 | |
| GS 2014a | FJ884177 | FJ967822 | ||||
| Trichoderma epimyces | CBS 120534 ET | Austria | EU518663 | EU498360 | EU498320 | |
| CPK 1980 | EU518662 | EU498359 | EU498319 | |||
| CPK 2487 ET | EU518665 | EU498361 | EU498322 | |||
| Trichoderma estonicum | GJS 96-129 | AY737767 | AF545514 | AF534604 | ||
| Trichoderma guizhouense | DAOM 231435 | EF191296 | EF191321 | |||
| HGUP0038 T | JN191311 | JQ901400 | JN215484 | |||
| S628 | KJ665273 | KJ665511 | ||||
| Trichoderma harzianum | CBS 226.95 ET | U.K. | Soil | AJ222720 | AF545549 | AF348101 |
| CBS 227.95 | AF057605 | AF348100 | ||||
| GJS 05 107 | FJ442679 | FJ442708 | FJ463329 | |||
| IMI 359823 | EF113587 | AF348092 | ||||
| Trichoderma hausknechtii | CBS 133493 | France | KJ665276 | KJ665515 | ||
| Trichoderma helicolixii | CBS 133499 ET | Spain | KJ665278 | KJ665517 | ||
| Trichoderma helicolixii | CBS 135583 | KJ665277 | KJ665516 | |||
| Trichoderma hengshanicum | HMAS 248852 T | China, Hubei | Soil | KY687935 | KY687991 | KY688054 |
| HMAS 248853 | KY687936 | KY687992 | KY688055 | |||
| Trichoderma hirsutum | HMAS 248834 T | China, Hubei | Soil | KY687916 | KY687972 | KY688029 |
| HMAS 248859 | KY687942 | KY687998 | KY688030 | |||
| Trichoderma hunanense | HMAS 248841 T | China, Hunan | Soil | NR_154571 | KY687980 | KY688039 |
| HMAS 248867 | KY687950 | KY688005 | KY688040 | |||
| Trichoderma ingratum | HMAS 248822 T | China, Sichuan | Soil | KY687917 | KY687973 | KY688018 |
| HMAS 248827 | KY687909 | KY687966 | KY688021 | |||
| HMAS 248873 | KY687956 | KY688010 | KY688022 | |||
| Trichoderma inhamatum | CBS 273.78 ET | Colombia | Soil | FJ442680 | FJ442725 | AF348099 |
| Trichoderma italicum | CBS 132567 | KJ665282 | KJ665525 | |||
| S15 ET | Italy | KJ665283 | KJ665526 | |||
| Trichoderma lentiforme | CBS 100542 ET | French Guiana | Decorticated wood | AF469189 | – | AF469195 |
| DIS 253B | FJ442619 | FJ442756 | FJ851875 | |||
| DIS 94D | FJ442615 | FJ442749 | FJ463379 | |||
| Trichoderma lentinulae | HMAS 248256 T | China | Lentinula | MN594469 | MN605867 | MN605878 |
| CGMCC 3.19848 | China | Lentinula | MN594470 | MN605868 | MN605879 | |
| CGMCC 3.19849 | China | Lentinula | MN594471 | MN605869 | MN605880 | |
| CGMCC 3.19699 | China | Soil | MN594478 | MN605876 | MN605887 | |
| CGMCC 3.19670 | China | Soil | MN594479 | MN605877 | MN605888 | |
| Trichoderma liberatum | HMAS 248831 T | China,Hubei | Soil | KY687913 | KY687969 | KY688025 |
| Trichoderma liberatum | HMAS 248832 | KY687914 | KY687970 | KY688026 | ||
| Trichoderma linzhiense | HMAS 248846 T | China, Tibet | Soil | KY687929 | KY687985 | KY688047 |
| HMAS 248874 | KY687957 | KY688011 | KY688048 | |||
| Trichoderma lixii | CBS 110080 ET | Thailand | Decayed Ganoderma | AF443920 | KJ665290 | AF443938 |
| Trichoderma neotropicale | LA11 ET | HQ022407 | HQ022771 | |||
| T51 | FJ884180 | FJ967825 | ||||
| Trichoderma parestonicum | CBS 120636 ET | FJ860803 | FJ860565 | |||
| Trichoderma parepimyces | CBS 122768 | FJ860801 | FJ860563 | FJ860665 | ||
| CBS 122769 ET | Austria | Wood | MH863234 | FJ860562 | FJ860664 | |
| Trichoderma perviride | HMAS 273786 | China,Hubei | Wood | KX026962 | KX026954 | |
| Trichoderma pinicola | KACC 48486 ET | Korea | root of Pinus densiflora | MH050354 | MH025993 | MH025981 |
| SFC20130926-S014 | MH025991 | MH025978 | ||||
| SFC20130926-S111 | MH025992 | MH025980 | ||||
| Trichoderma pleuroti | CBS 124387 ET | Korea | Pleurotus substrate | HM142363 | HM142372 | HM142382 |
| CPK 2117 | EU279975 | |||||
| Trichoderma pleuroticola | CBS 124383 ET | Korea | Pleurotus substrate | HM142362 | HM142371 | HM142381 |
| GJS 95 81 | AF345948 | AF348102 | ||||
| TRS70 ET | KP009264 | KP009172 | KP008951 | |||
| Trichoderma polypori | HMAS 248855 T | Hunan | Soil | KY687938 | KY687994 | KY688058 |
| HMAS 248861 | KY687944 | KY688000 | KY688059 | |||
| Trichoderma polysporum | S72 | KJ665685 | ||||
| Trichoderma priscilae | CBS 131487 ET | Spain | KJ665333 | KJ665691 | ||
| Trichoderma pseudodensum | HMAS 248828 T | Hubei | Soil | KY687910 | KY687967 | KY688023 |
| HMAS 248829 | KY687911 | KY687968 | KY688024 | |||
| Trichoderma pseudogelatinosum | CNUN309 ET | Japan | Shiitake mushroom | HM769754 | HM920173 | HM920202 |
| Trichoderma purpureum | HMAS 273787 T | China,Hubei | KX026961 | KX026953 | ||
| Trichoderma pyramidale | CBS 135574 ET | Italy | Olea europaea | KJ665334 | KJ665699 | |
| Trichoderma rifaii | CBS 130746 | Ecuador | Theobroma gileri | FJ442663 | FJ463324 | |
| DIS 337F ET | FJ442621 | FJ442720 | FJ463321 | |||
| Trichoderma rufobrunneum | HMAS 266614 T | China,Jilin | Rotten wood | KF729998 | KF730010 | KF729989 |
| isolate 8155 | KF730007 | KF729992 | ||||
| Trichoderma rugulosum | SFC20180301-001 T | MH050353 | MH025986 | MH025984 | ||
| SFC20180301-002 | MH025987 | MH025985 | ||||
| Trichoderma simmonsii | CBS 130431 | USA, Maryland | Decaying wood bark | AF443917 | FJ442757 | AF443935 |
| S297 | KJ665711 | |||||
| S7 | KJ665337 | KJ665719 | ||||
| Trichoderma simplex | HMAS 248842 T | China, Guangxi | Soil | KY687925 | KY687981 | KY688041 |
| HMAS 248860 | KY687943 | KY687999 | KY688042 | |||
| Trichoderma solum | HMAS 248847 | KY687930 | KY687986 | KY688049 | ||
| HMAS 248848 T | China, Hubei | Soil | KY687931 | KY687987 | KY688050 | |
| HMAS 248849 | KY687932 | KY687988 | KY688051 | |||
| Trichoderma stramineum | CBS 114248 ET | Sri Lanka | Decaying wood | AY737765 | AY391945 | AY737746 |
| TAMA 0425 | AB856609 | AB856748 | AB856675 | |||
| Trichoderma tawa | CBS 114233 ET | Thailand | Decaying bark | AY737756 | AY391956 | FJ463313 |
| DAOM 232841 | KJ842187 | EU279972 | ||||
| Trichoderma tenue | HMAS 273785 ET | China,Hubei | Wood | KX026960 | KX026952 | |
| Trichoderma tomentosum | DAOM 171918 | AY605715 | AY605759 | |||
| DAOM 178713a ET | Canada, Ontario | Ulmus wood | EU330958 | AF545557 | AY750882 | |
| DAOM 234236 | EU280083 | EU279971 | ||||
| Trichoderma velutinum | DAOM 230013 ET | Nepal | Soil | AF149873 | JN133569 | AY937415 |
| HMAS 273865 T | China, Heilongjiang | Soil | KX026965 | KX026957 | ||
| Trichoderma vermifimicola | CGMCC 3.19850 | China | Compost | MN594472 | MN605870 | MN605881 |
| HMAS 248255 T | China | Compost | MN594473 | MN605871 | MN605882 | |
| Trichoderma xixiacum | HMAS 248253 T | China | Soil | MN594476 | MN605874 | MN605885 |
| CGMCC 3.19698 | China | Soil | MN594477 | MN605875 | MN605886 | |
| Trichoderma zayuense | HMAS 248835 T | China,Tibet | Soil | KY687918 | KY687974 | KY688031 |
| HMAS 248836 | KY687919 | KY687975 | KY688032 | |||
| Trichoderma zelobreve | HMAS 248254 T | China | Mushroom | MN594474 | MN605872 | MN605883 |
| CGMCC 3.19696 | China | Soil | MN594475 | MN605873 | MN605884 | |
| Trichoderma zeloharzianum | YMF 1.00268 ET | China,Yunan | Soil | MH113932 | MH158996 | MH183181 |