REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
IL-17RA | Lifespan Bioscience | Cat#LS-C359381 |
IL-17RC | Lifespan Bioscience | Cat#LS-400522 |
FOSL | Boster | Cat# A03927 |
IL-36G | Santa Cruz Biotechnology | Cat#Sc-80056; RRID: AB_2124893 |
TNFAIP3 | Abcam | Cat#Ab74037; RRID: AB_1524499 |
APOBEC3A | Lifespan Bioscience | Cat#LS-C98892-400 |
Biological Samples | ||
Skin Biopsies | UCLA | N/A |
Skin Biopsies | University of Michigan | N/A |
PBMCs | MGH | N/A |
Chemicals, Peptides, and Recombinant Proteins | ||
Maxima H-RT and Buffer | ThermoFisher Scientific | Cat#EP0751 |
dNTPs | New England Biolabs | Cat#N0447L |
Polyethylene Glycol 8000 | Fisher Scientific | Cat#BP233-1 |
SUPERase∗In RNase inhibitor | ThermoFisher Scientific | Cat#AM2696 |
Exonuclease I and Buffer | New England Biolabs | Cat#M0293S |
1M Tris-HCl, pH 8.0 | ThermoFisher Scientific | Cat#15568025 |
Klenow Fragment (3’®5’ exo-) | New England Biolabs | Cat#M0212L |
KAPA 2x HiFi HotStart PCR mix | Kapa Biosystems | Cat#KK2602 |
Nextera XT Kit | Illumina, Inc | Cat#FC-131-1096 |
UltraPure DNase/Rnase-Free Distilled Water | ThermoFisher Scientific | Cat#10977015 |
TWEEN 20 | Fisher Scientific | Cat#BP337-100 |
Sodium Dodecyl Sulfate (SDS) Solution | Sigma | Cat#71736-100mL |
TE Buffer | ThermoFisher Scientific | Cat#12090015 |
Critical Commercial Assays | ||
mRNA Capture Beads | Chemgenes Corp. | Cat#MACOSKO-2011-10B |
KAPA 2x HiFi HotStart PCR mix | Kapa Biosystems | Cat#KK2602 |
NextSeq500 (75 cycles) | Illumina | Cat#20024906 |
Nova-Seq S2 (100 cycles) | Illumina | Cat#20028316 |
Deposited Data | ||
Raw and Processed data | GEO | GEO: GSE150672 |
Experimental Models: Cell Lines | ||
HEK293 | ATCC | CRL-1573 |
NIH/3T3s | ATCC | CRL-1658 |
Oligonucleotides | ||
Template-Switching Oligo: AAGCAGTGGTATCAACGCAG AG TGAATrGrGrG |
This Paper | N/A |
SMART PCR Primer: AAGCAGTGGTATCAACGCAGAGT |
This Paper | N/A |
S3 Randomer:AAGCAGTGGTAT CAACGCAGAGTGANNNGGNNNB |
This Paper | N/A |
P5-SMART Hybrid Oligo: AATGATACGGCGACCACCG AGATCTACACGCCTGTCCGC G-GAAGCAG TGGTA TCAACGCAGAGT∗A∗C |
This Paper | N/A |
Custom Read 1 Primer: GCCTGTCCGCGGAAGC AGTGGTATCAACGCAGAGTAC |
This Paper | N/A |
Software and Algorithms | ||
Seurat | Satija et al. 2015 | http://satijalab.org/seurat/ |
SCANPY | Wolf et al. 2018 | http://github.com/theislab/Scanpy |