Table 1.

Common candidate genes associated with EGCG and caffeine contents as assessed by genome-wide association studies (GWASs).

Associated SNPs				Candidate genes
				GeneID	Chr	Gene position (bp)		Strand	Distance from gene (bp)	Gene annotation
Chr	Position (bp)	P-value for EGCG	P-value for caffeine			Up	Down
12	2,549,738	3.E−05	2.E−03	CSS0013722	12	2,544,002	2,563,160	−	Region within the gene	Putative phagocytic receptor 1b
4	71,890,059	1.E−02	6.E−03	CSS0006445	4	71,892,372	71,894,683	−	2313	NA
14	87,255,362	7.E−03	2.E−02	CSS0007093	14	87,257,768	87,260,368	+	− 2406	Hypothetical protein VITISV_023007
2	12,909,634	2.E−03	7.E−03	CSS0008055	2	12,908,731	12,917,237	−	Region within the gene	Probable serine/threonine-protein kinase
7	26,653,857	1.E−02	2.E−02	CSS0012938	7	26,645,975	26,689,027	+	Region within the gene	SPA1-related 3 isoform 1
15	5,519,341	8.E−03	2.E−02	CSS0014189	15	5,518,230	5,522,057	−	Region within the gene	RING-H2 finger protein ATL3
4	71,890,059	1.E−02	6.E−03	CSS0020256	4	71,881,294	71,884,993	+	5066	Auxin response factor 17-like
1	217,617,856	8.E−03	2.E−02	CSS0023674	1	217,618,798	217,622,981	−	942	Hypothetical protein VITISV_013519
15	5,519,341	8.E−03	2.E−02	CSS0025062	15	5,502,746	5,516,691	+	2650	Ubiquitin conjugating enzyme J2
14	79,981,575	3.E−03	4.E−03	CSS0026002	14	79,978,507	79,982,432	−	Region within the gene	MATE efflux family protein 5
2	12,909,634	2.E−03	7.E−03	CSS0029046	2	12,894,561	12,904,995	−	− 4639	Proteasome subunit alpha type-2-B
4	71,890,059	1.E−02	6.E−03	CSS0030407	4	71,894,597	71,901,185	+	− 4538	Auxin response factor 17-like
2	12,909,634	2.E−03	7.E−03	CSS0050267	2	12,915,964	12,922,795	−	6330	WRKY transcription factor