Table 4.
Prediction on CPC2 dataset.
| Species | Methods | SEN% | SPE% | ACC% | MCC% |
|---|---|---|---|---|---|
| Humans | CPAT | 90.247 | 95.409 | 92.574 | 85.285 |
| CPC2 | 92.692 | 95.995 | 94.181 | 88.386 | |
| PreLnc | 96.072 | 98.893 | 97.344 | 94.705 | |
| PLEK | 92.866 | 89.086 | 91.163 | 82.132 | |
| LncFinder | 93.106 | 96.239 | 94.518 | 89.054 | |
| Mice | CPAT | 97.879 | 91.003 | 93.601 | 87.154 |
| CPC2 | 94.892 | 93.871 | 94.257 | 87.972 | |
| PreLnc | 92.167 | 92.254 | 92.221 | 83.677 | |
| PLEK | 96.409 | 85.888 | 89.986 | 80.498 | |
| LncFinder | 96.703 | 95.412 | 95.912 | 91.428 | |
| A. thaliana | CPAT | 99.961 | 93.371 | 94.391 | 82.777 |
| CPC2 | 99.649 | 95.310 | 95.981 | 95.981 | |
| PreLnc | 98.205 | 100.000 | 99.722 | 98.936 | |
| PLEK | 98.712 | 86.004 | 87.972 | 68.947 | |
| LncFinder | 96.721 | 93.443 | 93.951 | 80.768 | |
| RNAplonc | 98.205 | 94.101 | 94.737 | 83.181 | |
| PLncPRO | 99.141 | 94.881 | 95.540 | 85.552 |
The numbers in bold are the highest parameters of the prediction results. The datasets consist of humans (lncRNAs: 6142, mRNAs: 7485), mice (lncRNAs: 10638, mRNAs: 6460), and A. thaliana (lncRNAs: 2562, mRNAs: 13986). PreLnc had the highest prediction accuracy of 97.344% on humans and 99.722% on A. thaliana, and LncFinder had the highest prediction accuracy of 95.912% on mice.