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. 2020 Sep 3;12(9):2496. doi: 10.3390/cancers12092496
ICIs: Immune checkpoint inhibitors;
NSCLC: Non-small cell lung cancer;
EGFR: Epidermal growth factor receptor;
PD-L1: programmed death-ligand 1;
DMRs: differentially methylated regions;
PLCXD3: Phosphatidylinositol-Specific Phospholipase C, X Domain Containing 3;
BAIAP2L2: BAR/IMD Domain Containing Adaptor Protein 2 Like 2;
NPR3: Natriuretic Peptide Receptor 3;
SNX10: Sorting Nexin 10;
XDH: Xanthine Dehydrogenase;
ATIC: 5-Aminoimidazole-4-Carboxamide Ribonucleotide Formyltransferase/IMP Cyclohydrolase;
CA9: Carbonic Anhydrase 9;
SLC7A11: Solute Carrier Family 7 Member 11;
GAPDH: Glyceraldehyde-3-Phosphate Dehydrogenase;
TKI: Tyrosine kinase inhibitors;
PD1: Programmed death 1;
ALK: ALK receptor tyrosine kinase;
OS: Overall survival;
IDO: Indoleamine 2,3-dioxygenase;
VEGF: Vascular endothelial growth factor;
CTLA-4: Cytotoxic T-lymphocyte-associated protein 4;
LAG-3: Lymphocyte-activation gene 3;
Tim-3: T-cell immunoglobulin mucin 3;
TCGA: The Cancer Genome Atlas;
DMEGs: differentially methylated and expressed genes;
GEO: Gene Expression Omnibus;
DMSs: Differentially methylated CpG sites;
DMRs: Differentially methylated regions;
DMGs: Differentially methylated genes;
FDR: False discovery rate;
BH: Benjamini and Hochberg;
DEGs: Differentially expressed genes;
GO: Gene Ontology;
KEGG: Kyoto Encyclopedia of Genes and Genomes;
BP: Biological process;
CC: Cellular component;
MF: Molecular functions;
PCA: Principal Component Analysis;
LOOCV: Leave-one-out cross-validation;
ROC: Receiver operating characteristic;
AUC: Area under the curve;
LASSO: Least Absolute Shrinkage and Selection Operator;
TIMER: Tumor immune estimation resource;
ESTIMATE: Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data;
RMSD: Root-mean-square deviation;
TSS Transcription start sites
CD274: CD274 molecule, also known as PD-L1;
HAVCR2: Hepatitis A Virus Cellular Receptor 2, also known as TIM3;
PDCD1: Programmed Cell Death 1, also known as PD1;
PDCD1LG2: Programmed Cell Death 1 Ligand 2;
CDO1: Cysteine Dioxygenase Type 1;
IRF8: Interferon Regulatory Factor 8;
STAT5A: Signal Transducer and Activator of Transcription 5A;
CFTR: CF Transmembrane Conductance Regulator;
ADAMTS8: ADAM Metallopeptidase with Thrombospondin Type 1 Motif 8;
WIF1: WNT Inhibitory Factor 1;
GATA5: GATA Binding Protein 5;
FOXA2: FOXA2;
SHISA3: Shisa Family Member 3;
AXIN2: Axin 2;
DIRAS3: DIRAS family GTPase 3;
IRX1: Iroquois Homeobox 1;
ITGA5: Integrin Subunit Alpha 5;
CAMK2N1: Calcium/Calmodulin Dependent Protein Kinase II Inhibitor 1;
CRC: Colorectal cancer;
SNX10: Sorting nexin 10;
ALS: Amyotrophic lateral sclerosis;
IBD: Inflammatory bowel disease