ICIs: |
Immune checkpoint inhibitors; |
NSCLC: |
Non-small cell lung cancer; |
EGFR: |
Epidermal growth factor receptor; |
PD-L1: |
programmed death-ligand 1; |
DMRs: |
differentially methylated regions; |
PLCXD3: |
Phosphatidylinositol-Specific Phospholipase C, X Domain Containing 3; |
BAIAP2L2: |
BAR/IMD Domain Containing Adaptor Protein 2 Like 2; |
NPR3: |
Natriuretic Peptide Receptor 3; |
SNX10: |
Sorting Nexin 10; |
XDH: |
Xanthine Dehydrogenase; |
ATIC: |
5-Aminoimidazole-4-Carboxamide Ribonucleotide Formyltransferase/IMP Cyclohydrolase; |
CA9: |
Carbonic Anhydrase 9; |
SLC7A11: |
Solute Carrier Family 7 Member 11; |
GAPDH: |
Glyceraldehyde-3-Phosphate Dehydrogenase; |
TKI: |
Tyrosine kinase inhibitors; |
PD1: |
Programmed death 1; |
ALK: |
ALK receptor tyrosine kinase; |
OS: |
Overall survival; |
IDO: |
Indoleamine 2,3-dioxygenase; |
VEGF: |
Vascular endothelial growth factor; |
CTLA-4: |
Cytotoxic T-lymphocyte-associated protein 4; |
LAG-3: |
Lymphocyte-activation gene 3; |
Tim-3: |
T-cell immunoglobulin mucin 3; |
TCGA: |
The Cancer Genome Atlas; |
DMEGs: |
differentially methylated and expressed genes; |
GEO: |
Gene Expression Omnibus; |
DMSs: |
Differentially methylated CpG sites; |
DMRs: |
Differentially methylated regions; |
DMGs: |
Differentially methylated genes; |
FDR: |
False discovery rate; |
BH: |
Benjamini and Hochberg; |
DEGs: |
Differentially expressed genes; |
GO: |
Gene Ontology; |
KEGG: |
Kyoto Encyclopedia of Genes and Genomes; |
BP: |
Biological process; |
CC: |
Cellular component; |
MF: |
Molecular functions; |
PCA: |
Principal Component Analysis; |
LOOCV: |
Leave-one-out cross-validation; |
ROC: |
Receiver operating characteristic; |
AUC: |
Area under the curve; |
LASSO: |
Least Absolute Shrinkage and Selection Operator; |
TIMER: |
Tumor immune estimation resource; |
ESTIMATE: |
Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data; |
RMSD: |
Root-mean-square deviation; |
TSS |
Transcription start sites |
CD274: |
CD274 molecule, also known as PD-L1; |
HAVCR2: |
Hepatitis A Virus Cellular Receptor 2, also known as TIM3; |
PDCD1: |
Programmed Cell Death 1, also known as PD1; |
PDCD1LG2: |
Programmed Cell Death 1 Ligand 2; |
CDO1: |
Cysteine Dioxygenase Type 1; |
IRF8: |
Interferon Regulatory Factor 8; |
STAT5A: |
Signal Transducer and Activator of Transcription 5A; |
CFTR:
|
CF Transmembrane Conductance Regulator; |
ADAMTS8: |
ADAM Metallopeptidase with Thrombospondin Type 1 Motif 8; |
WIF1:
|
WNT Inhibitory Factor 1; |
GATA5: |
GATA Binding Protein 5; |
FOXA2: |
FOXA2; |
SHISA3:
|
Shisa Family Member 3; |
AXIN2: |
Axin 2; |
DIRAS3: |
DIRAS family GTPase 3; |
IRX1: |
Iroquois Homeobox 1; |
ITGA5: |
Integrin Subunit Alpha 5; |
CAMK2N1: |
Calcium/Calmodulin Dependent Protein Kinase II Inhibitor 1; |
CRC: |
Colorectal cancer; |
SNX10: |
Sorting nexin 10; |
ALS: |
Amyotrophic lateral sclerosis; |
IBD: |
Inflammatory bowel disease |