Table 1.
QTLR | Chr | Start | End | Length | Genes | lncRNAs |
---|---|---|---|---|---|---|
1 | 1 | 8,854,589 | 9,261,317 | 406,729 | 0 | 1 |
2 | 1 | 13,268,810 | 14,294,877 | 1,026,068 | 12 | 34 |
3 | 1 | 52,012,381 | 52,517,953 | 505,573 | 2 | 4 |
4 | 1 | 71,738,977 | 73,085,956 | 1,346,980 | 16 | 28 |
5 | 1 | 75,288,912 | 77,765,499 | 2,476,588 | 86 | 79 |
6 | 1 | 91,482,501 | 91,803,475 | 320,975 | 10 | 9 |
7 | 1 | 101,761,945 | 104,477,713 | 2,715,769 | 31 | 37 |
8 | 1 | 109,395,871 | 110,913,451 | 1,517,581 | 20 | 32 |
9 | 1 | 169,656,958 | 172,228,091 | 2,571,134 | 32 | 44 |
10 | 1 | 174,394,951 | 175,634,386 | 1,239,436 | 23 | 33 |
11 | 1 | 194,193,118 | 194,788,548 | 595,431 | 18 | 23 |
12 | 2 | 15,960 | 883,257 | 867,298 | 45 | 20 |
13 | 2 | 46,423,161 | 46,868,789 | 445,629 | 11 | 12 |
14 | 2 | 105,493,833 | 108,988,920 | 3,495,088 | 34 | 47 |
15 | 2 | 125,168,753 | 127,089,304 | 1,920,552 | 25 | 34 |
16 | 2 | 138,767,830 | 139,701,774 | 933,945 | 4 | 7 |
17 | 3 | 108,220,206 | 109,260,649 | 1,040,444 | 13 | 9 |
18 | 4 | 8,308,498 | 11,268,107 | 2,959,610 | 54 | 99 |
19 | 4 | 84,393,173 | 88,579,400 | 4,186,228 | 68 | 73 |
20 | 5 | 7,568,851 | 8,147,837 | 578,987 | 4 | 3 |
21 | 5 | 18,806,924 | 19,673,354 | 866,431 | 4 | 3 |
22 | 6 | 2,077,640 | 2,709,412 | 631,773 | 19 | 13 |
23 | 6 | 29,536,109 | 29,817,337 | 281,229 | 10 | 16 |
24 | 6 | 31,006,769 | 31,448,342 | 441,574 | 7 | 6 |
25 | 7 | 13,062,871 | 16,436,053 | 3,373,183 | 55 | 82 |
26 | 10 | 22,643 | 1,713,384 | 1,690,742 | 63 | 28 |
27 | 11 | 7,397,790 | 8,440,259 | 1,042,470 | 9 | 28 |
28 | 12 | 8,996,686 | 9,432,693 | 436,008 | 15 | 16 |
29 | 13 | 10,363,430 | 12,176,727 | 1,813,298 | 27 | 40 |
30 | 14 | 8,085,563 | 9,335,685 | 1,250,123 | 38 | 50 |
31 | 14 | 13,138,194 | 15,087,518 | 1,949,325 | 82 | 41 |
32 | 16 | 1630 | 490,907 | 489,278 | 47 | 14 |
33 | 17 | 3,442,598 | 5,634,042 | 2,191,445 | 64 | 84 |
34 | 18 | 3,196,488 | 4,093,129 | 896,642 | 22 | 32 |
35 | 24 | 4,489,675 | 5,514,833 | 1,025,159 | 42 | 32 |
36 | 26 | 4,378,168 | 5,036,699 | 658,532 | 22 | 17 |
37 | 27 | 1,540,112 | 2,270,461 | 730,350 | 23 | 11 |
38 | 28 | 1,282,726 | 1,571,011 | 288,286 | 15 | 12 |
QTLR—ordinal number of the QTLR after consolidation within and across families (see Section 2.6); Chr—chromosome; Start/End—Galgal4 QTLR coordinates of the first and last SNP in the QTLR; Length—Size of the QTLR (bp); Genes and lncRNA—number of genes (Ensembl database v79) and non-coding RNAs [43] found in the QTLR.