Table 3.
Genomic sequences sizes, GC%, total count of PQS, and mean frequencies of quadruplex motifs. Seq (total number of sequences), Median (median length of sequences), Short. (shortest sequence), Long. (longest sequence), GC % (average GC content), PQS (total number of predicted PQS), Mean f (mean frequency of predicted PQS per 1000 bp), Min f (lowest frequency of predicted PQS per 1000 bp), Max f (highest frequency of predicted PQS per 1000 bp). %PQS corresponds to the probability that any given nucleotide in the group or subgroup belongs to a G4-prone region (G4H > 1.2). Colors correspond to phylogenetic tree depiction.
| Kingdom | Seq. | Median | Short | Long | GC % | PQS | Mean f | Min f | Max f | % PQS |
|---|---|---|---|---|---|---|---|---|---|---|
| Archeae | 3387 | 1,686,930 | 100,212 | 13,399,915 | 46.51 | 7,927,775 | 1.21 | 0.04 | 15.31 | 3.58 |
| Superphylum | Seq. | Median | Short | Long | GC % | PQS | Mean f | Min f | Max f | % PQS |
| BAT | 320 | 1,180,629 | 164,795 | 3,506,105 | 43.07 | 421,678 | 1.16 | 0.05 | 8.42 | 3.49 |
| Cren | 379 | 1,808,184 | 210,860 | 6,451,204 | 43.05 | 1,009,660 | 1.56 | 0.09 | 9.44 | 4.75 |
| Asgard | 71 | 2,322,715 | 291,515 | 5,684,038 | 38.75 | 74,647 | 0.47 | 0.12 | 1.50 | 1.39 |
| DPANN | 309 | 832,169 | 100,212 | 6,604,953 | 39.22 | 219,058 | 0.70 | 0.08 | 4.20 | 2.18 |
| Eury | 2308 | 1,826,841 | 137,797 | 13,399,915 | 48.77 | 6,202,732 | 1.25 | 0.04 | 15.31 | 3.68 |
| Phylum | Seq. | Median | Short | Long | GC % | PQS | Mean f | Min f | Max f | % PQS |
| Bathyarchaeota | 128 | 1,208,976.5 | 200,493 | 3,506,105 | 46.29 | 245,162 | 1.54 | 0.23 | 8.42 | 3.00 |
| Thaumarchaeota | 192 | 1,173,909.5 | 164,795 | 3,441,569 | 40.93 | 176,516 | 0.91 | 0.05 | 5.32 | 2.73 |
| Thermoproteales | 147 | 1,581,744 | 242,587 | 3,969,448 | 45.86 | 513,053 | 2.07 | 0.11 | 7.38 | 6.31 |
| Sulfolobales | 118 | 2,223,757.5 | 210,860 | 3,034,024 | 38.20 | 200,842 | 0.79 | 0.34 | 4.58 | 2.38 |
| Desulfurococcales | 29 | 1,580,347 | 807,477 | 2,148,448 | 46.99 | 99,211 | 2.29 | 0.40 | 6.37 | 6.95 |
| Verstraetearchaeota | 18 | 1,171,913.5 | 419,172 | 1,937,662 | 46.76 | 40,586 | 1.83 | 0.10 | 3.43 | 5.50 |
| Marsarchaeota | 15 | 1,915,630 | 351,358 | 3,731,392 | 46.72 | 52,853 | 1.64 | 0.47 | 2.94 | 5.01 |
| Geothermarchaeota | 6 | 1,183,145.5 | 803,797 | 1,671,866 | 42.72 | 16,582 | 2.15 | 0.96 | 7.03 | 6.65 |
| Nezhaarchaeota | 2 | 1,332,140.5 | 1,315,707 | 1,348,574 | 43.53 | 2016 | 0.76 | 0.75 | 0.77 | 2.27 |
| Korarchaeota | 18 | 1,542,873 | 834,209 | 2,942,065 | 48.39 | 68,434 | 2.63 | 1.05 | 9.44 | 7.95 |
| Unclassified Crenarchaeota | 27 | 1,203,892 | 301,027 | 6,451,204 | 37.01 | 19,361 | 0.44 | 0.09 | 1.49 | 1.29 |
| Lokiarchaeota | 29 | 1,892,624 | 320,847 | 5,143,417 | 32.77 | 25,479 | 0.41 | 0.21 | 1.50 | 1.24 |
| Odinarchaeota | 1 | 1,460,710 | 1,460,710 | 1,460,710 | 38.05 | 1038 | 0.71 | 0.71 | 0.71 | 2.16 |
| Thorarchaeota | 29 | 2,770,204 | 291,515 | 4,389,059 | 46.55 | 40,006 | 0.60 | 0.24 | 1.18 | 1.76 |
| Heimdallarchaeota | 12 | 2,167,091 | 432,340 | 5,684,038 | 34.42 | 8124 | 0.27 | 0.12 | 0.50 | 0.82 |
| Aenigmarchaeota | 35 | 751,672 | 248,182 | 1,410,470 | 39.33 | 17,990 | 0.71 | 0.11 | 3.78 | 2.12 |
| Nanohaloarchaeota | 17 | 815,638 | 565,289 | 1,480,846 | 44.53 | 8672 | 0.48 | 0.09 | 1.82 | 1.50 |
| Woesearchaeota | 72 | 966,794.5 | 518,295 | 2,944,567 | 40.77 | 57,833 | 0.66 | 0.08 | 3.92 | 1.96 |
| Pacearchaeota | 60 | 719,507 | 279,432 | 6,604,953 | 33.74 | 37,675 | 0.56 | 0.08 | 2.99 | 1.73 |
| Nanoarchaeota | 25 | 577,110 | 204,081 | 1,162,239 | 32.83 | 9940 | 0.59 | 0.13 | 4.20 | 1.70 |
| Micrarchaeota | 39 | 887,931 | 658,716 | 1,333,875 | 50.41 | 42,298 | 1.17 | 0.15 | 2.86 | 3.47 |
| Diapherotrites | 19 | 568,419 | 302,064 | 1,130,899 | 37.42 | 6077 | 0.49 | 0.11 | 2.33 | 1.46 |
| Unclassified DPANN | 40 | 858,043.5 | 100,212 | 3,188,023 | 35.57 | 33,846 | 0.67 | 0.15 | 2.39 | 2.04 |
| Hadesarchaeota | 12 | 857,575 | 451,393 | 1,241,441 | 53.77 | 56,369 | 4.61 | 1.26 | 15.31 | 14.55 |
| Persephonarchaeota | 33 | 637,942 | 137,797 | 1,412,535 | 44.06 | 34,905 | 1.49 | 0.59 | 2.36 | 4.49 |
| Thermococcales | 60 | 1,867,904.5 | 207,909 | 2,388,527 | 46.77 | 191,492 | 1.72 | 0.47 | 7.53 | 5.15 |
| Theinoarchaeota | 2 | 4,165,806 | 3,559,548 | 4,772,064 | 41.57 | 5480 | 0.66 | 0.65 | 0.67 | 1.94 |
| Methanofastidiosa | 96 | 992,372 | 156,656 | 13,399,915 | 40.71 | 141,192 | 0.83 | 0.08 | 3.64 | 2.54 |
| Methanococcales | 24 | 1,717,483 | 1,207,361 | 1,936,387 | 32.01 | 15,065 | 0.39 | 0.20 | 0.86 | 1.19 |
| Methanobacteriales | 224 | 2,001,036 | 1,157,521 | 3,466,370 | 33.62 | 175,191 | 0.39 | 0.04 | 2.32 | 1.14 |
| Methanopyrales | 3 | 1,430,309 | 1,421,621 | 1,694,969 | 58.94 | 10,798 | 2.34 | 1.97 | 3.00 | 6.84 |
| Methanomassilicoccales | 91 | 1,404,109 | 640,223 | 2,641,216 | 56.22 | 257,340 | 1.85 | 0.22 | 4.41 | 5.38 |
| Thermoplasmatales | 135 | 1,621,237 | 593,453 | 2,816,557 | 42.71 | 246,832 | 1.13 | 0.11 | 7.03 | 3.42 |
| Acidoprofondum/DHV2-2 | 11 | 1,731,076 | 519,420 | 2,981,805 | 40.55 | 16,609 | 1.21 | 0.29 | 4.12 | 3.59 |
| Archaeoglobales | 53 | 1,901,943 | 478,535 | 3,408,041 | 42.98 | 117,470 | 1.22 | 0.57 | 3.29 | 3.66 |
| Methanosarcinales | 279 | 2,913,215 | 208,261 | 5,751,492 | 44.99 | 845,394 | 1.19 | 0.15 | 7.52 | 3.54 |
| Methanomicrobiales | 146 | 2,228,967.5 | 622,799 | 3,978,804 | 54.97 | 783,172 | 2.38 | 0.23 | 7.20 | 7.07 |
| Methanocellales | 5 | 2,957,635 | 1,465,272 | 3,243,770 | 50.96 | 16,825 | 1.21 | 0.41 | 1.88 | 3.51 |
| Halobacteriales | 440 | 3,585,981 | 397,623 | 5,605,381 | 63.95 | 2,271,600 | 1.56 | 0.08 | 4.25 | 4.50 |
| Unclassified Diaforarchaea | 97 | 1,460,542 | 233,168 | 2,294,894 | 47.38 | 136,115 | 1.03 | 0.18 | 2.55 | 3.02 |
| Unclassified other | 597 | 1,400,198 | 258,312 | 7,416,915 | 46.88 | 862,962 | 1.02 | 0.07 | 5.16 | 3.00 |