Table 2.
Target | Primer | Sequence (5′–3′) | Amplicon Size (bp) | Conditions |
mcr-1 | mcr-1-Fw | CGGTCAGTCCGTTTGTTC | 309 | 20 cycles of amplification at 94 °C for 30 s, 58 °C for 90 s, 72 °C for 1 min and final 72 °C for 10 min |
mcr-1-Rv | CTTGGTCGGTCTGTAGGG | |||
mcr-2 | mcr-2-Fw | TGTTGCTTGTGCCGATTGGA | 567 | 33 cycles of amplification at 95 °C for 3 min, 65 °C for 30 s, 72 °C for 1 min and final 72 °C for 10 min. |
mcr-2-Rv | AGATGGTATTGTTGGTTGCTG | |||
mcr-3 | mcr-3-Fw | TTGGCACTGTATTTTGCATTT | 542 | 30 cycles of amplification at 95 °C for 30 s, 50 °C for 30 s, 72 °C for 45 s and final 72 °C for 7 min. |
mcr-3-Rv | TTAACGAAATTGGCTGGAACA | |||
mcr-4 | mcr-4-Fw | ATTGGGATAGTCGCCTTTTT | 487 | 20 cycles of amplification at 94 °C for 30 s, 58 °C for 90 s, 72 °C for 1 min and final 72 °C for 10 min |
mcr-4-Rv | TTACAGCCAGAATCATTATCA | |||
mcr-5 | mcr-5-Fw | ATGCGGTTGTCTGCATTTATC | 1644 | 30 cycles of amplification at 95 °C for 30 s, 50 °C for 30 s, 72 °C for 95 s and final 72 °C for 5 min. |
mcr-5-Rv | TCATTGTGGTTGTCCTTTTCTG |
Fw: Forward, Rv: Reverse.