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. 2020 Nov;26(11):1557–1574. doi: 10.1261/rna.075580.120

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© 2020 Donsbach et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society

This article is distributed exclusively by the RNA Society for the first 12 months after the full-issue publication date (see http://rnajournal.cshlp.org/site/misc/terms.xhtml). After 12 months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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FIGURE 4. — Sequence motifs in Hera-bound RNAs. (A) Fifteen nucleotide motif identified with MEME (normal-growth conditions). (B) Fifteen nucleotide motif identified with MEME (cold-shock conditions). (C) Seven nucleotide motifs identified with DREME (normal-growth conditions). The gray line marks a GGNY motif compatible with binding to the Hera RBD. (D) Seven nucleotide motifs identified with DREME (cold-shock conditions). The gray line marks a GGNY motif compatible with binding to the Hera RBD. (E) Occurrence according to FIMO of motifs 1 and 2 discovered with DREME in all peak sequences identified under normal-growth conditions. (F) Occurrence according to FIMO of motifs 1 and 2 discovered with DREME in all peak sequences identified under cold-shock conditions.