Table 1. Taxonomic identifications based on similarity searches against the fungal RefSeq database for fungal sequences associated with the roots of winter wheat (Triticum aestivum) from sites under organic and conventional management.
| Sequence ID | MOTU | Species | Trophic mode | Farming system |
|---|---|---|---|---|
| KY430446 | 7 | Helotiales incertae sedis | – | Conventional |
| KY430447 | 7 | Ascomycota | – | Organic |
| KY430448 | 7 | Ascomycota | – | Organic |
| KY430449 | 7 | Ascomycota | – | Organic |
| KY430451 | 19 | Schizothecium | Saprotroph | Conventional |
| KY430452 | 38 | Candida sake | Saprotroph | Organic |
| KY430453 | 38 | Candida sake | Saprotroph | Organic |
| KY430454 | 27 | Pleosporineae | – | Conventional |
| KY430455 | 29 | Didymellaceae | Pathotroph-Saprotroph | Conventional |
| KY430456 | 28 | Pleosporineae | – | Organic |
| KY430457 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430458 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430459 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430460 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430461 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430462 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430463 | 35 | Vishniacozyma victoriae | Pathotroph-Saprotroph-Symbiotroph | Organic |
| KY430465 | 6 | Agaricomycetes | – | Organic |
| KY430466 | 35 | Vishniacozyma victoriae | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430467 | 5 | Filobasidium | Saprotroph | Conventional |
| KY430468 | 5 | Filobasidium | Saprotroph | Organic |
| KY430469 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430470 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430471 | 7 | Ascomycota | – | Organic |
| KY430472 | 31 | Darksidea | Symbiotroph | Organic |
| KY430473 | 26 | Fusarium equiseti | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430474 | 36 | Ascomycota | – | Organic |
| KY430475 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430476 | 26 | Fusarium equiseti | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430477 | 26 | Fusarium equiseti | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430478 | 33 | Podospora | Saprotroph-Symbiotroph | Organic |
| KY430479 | 8 | Cystofilobasidium macerans | Saprotroph | Organic |
| KY430480 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430481 | 4 | Polyporales | – | Organic |
| KY430482 | 11 | Botryosphaeriales | – | Organic |
| KY430483 | 13 | Lentitheciaceae | – | Organic |
| KY430484 | 5 | Filobasidium | Saprotroph | Organic |
| KY430485 | 7 | Ascomycota | – | Organic |
| KY430487 | 24 | Leotiomycetes | – | Organic |
| KY430488 | 7 | Ascomycota | – | Organic |
| KY430489 | 30 | Ascomycota | – | Organic |
| KY430490 | 15 | Helminthosporium velutinum | Pathotroph | Organic |
| KY430491 | 34 | Vishniacozyma tephrensis | Pathotroph-Saprotroph-Symbiotroph | Organic |
| KY430492 | 7 | Ascomycota | – | Conventional |
| KY430493 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430494 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430496 | 7 | Ascomycota | – | Organic |
| KY430497 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430498 | 14 | Funneliformis mosseae | Symbiotroph | Organic |
| KY430499 | 7 | Ascomycota | – | Organic |
| KY430500 | 35 | Vishniacozyma victoriae | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430501 | 7 | Ascomycota | – | Conventional |
| KY430502 | 7 | Ascomycota | – | Organic |
| KY430503 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430504 | 7 | Ascomycota | – | Organic |
| KY430505 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430506 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430507 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430508 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430509 | 12 | Slopeiomyces cylindrosporus | Pathotroph | Organic |
| KY430510 | 22 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430511 | 22 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430512 | 19 | Schizothecium | Saprotroph | Conventional |
| KY430514 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430515 | 9 | Leucosporidium golubevii | – | Organic |
| KY430516 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430517 | 21 | Periconia | Pathotroph-Saprotroph-Symbiotroph | Organic |
| KY430518 | 7 | Ascomycota | – | Organic |
| KY430519 | 12 | Slopeiomyces cylindrosporus | Pathotroph | Organic |
| KY430520 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430521 | 20 | Microdochium | Pathotroph-Symbiotroph | Organic |
| KY430522 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430523 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430524 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430525 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430526 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430527 | 3 | Clavulina | Symbiotroph | Organic |
| KY430528 | 7 | Ascomycota | – | Organic |
| KY430529 | 7 | Ascomycota | – | Organic |
| KY430530 | 10 | Leucosporidium | – | Organic |
| KY430531 | 26 | Fusarium equiseti | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430532 | 32 | Podospora dimorpha | Saprotroph-Symbiotroph | Organic |
| KY430533 | 26 | Fusarium equiseti | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430534 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430536 | 8 | Cystofilobasidium macerans | Saprotroph | Organic |
| KY430537 | 7 | Ascomycota | – | Organic |
| KY430539 | 7 | Ascomycota | – | Conventional |
| KY430540 | 22 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430541 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430542 | 7 | Ascomycota | – | Organic |
| KY430543 | 7 | Ascomycota | – | Organic |
| KY430544 | 7 | Ascomycota | – | Organic |
| KY430545 | 7 | Ascomycota | – | Organic |
| KY430546 | 7 | Ascomycota | – | Organic |
| KY430547 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430548 | 1 | Malassezia restricta | Pathotroph-Saprotroph | Conventional |
| KY430549 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430550 | 8 | Cystofilobasidium macerans | Saprotroph | Conventional |
| KY430551 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430552 | 25 | Ascomycota | – | Organic |
| KY430553 | 2 | Malassezia restricta | Pathotroph-Saprotroph | Conventional |
| KY430555 | 7 | Ascomycota | – | Organic |
| KY430556 | 22 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430557 | 22 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430558 | 7 | Ascomycota | – | Conventional |
| KY430559 | 7 | Ascomycota | – | Conventional |
| KY430560 | 4 | Polyporales | – | Conventional |
| KY430561 | 23 | Leotiomycetes | – | Conventional |
| KY430563 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430564 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430565 | 7 | Ascomycota | – | Conventional |
| KY430566 | 7 | Ascomycota | – | Conventional |
| KY430567 | 7 | Ascomycota | – | Conventional |
| KY430568 | 7 | Ascomycota | – | Conventional |
| KY430569 | 24 | Leotiomycetes | – | Conventional |
| KY430570 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430571 | 37 | Dioszegia hungarica | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430572 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430573 | 35 | Vishniacozyma victoriae | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430574 | 17 | Holtermanniella | – | Conventional |
| KY430575 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430576 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430577 | 20 | Microdochium | Pathotroph-Symbiotroph | Conventional |
| KY430578 | 24 | Leotiomycetes | – | Conventional |
| KY430579 | 1 | Malassezia | Pathotroph-Saprotroph | Conventional |
| KY430580 | 0 | Agaricomycetes | – | Conventional |
| KY430581 | 18 | Fusarium nurragi | Pathotroph-Saprotroph-Symbiotroph | Conventional |
| KY430582 | 0 | Agaricomycetes | – | Conventional |
| KY430583 | 0 | Agaricomycetes | – | Conventional |
| KY430584 | 16 | Paraphoma radicina | Pathotroph-Saprotroph | Organic |
Note:
The accession numbers of sequences from this study are given as well as the assigned molecular operational taxonomic unit (MOTU), taxonomic information and ecological guild. Further Information can also be found in Table S4.