Appendix 2—table 2. The results of the comparison between experimentally verified, high-evidence binding sites and Reg-Seq-binding sites.
A visual illustration of the comparison can be found in Appendix 2—figures 2 and 3.
| Gene | Transcription factor | Was the region classified correctly? |
|---|---|---|
| rspA | CRP | Yes |
| rspA | YdfH | Yes |
| araAB | AraC (two sites) | Yes |
| znuCB | Zur | Yes |
| xylA | CRP | Yes |
| xylA | XylR (two sites) | Yes |
| xylF | XylR (two sites) | Yes |
| dicC | DicA | Yes |
| relBE | RelBE | Yes |
| ftsK | LexA | Yes |
| znuA | Zur | Yes |
| lac | CRP | Yes |
| marR | Fis | No |
| marR | MarA | Yes |
| marR | MarR (two sites) | Yes |
| dgoR | CRP | Yes |
| dgoR | DgoR (right site) | No |
| ompR | IHF (three sites) | Yes |
| ompR | CRP | No |
| dicA | DicA | No |
| araC | AraC (four sites) | one site identified |
| araC | CRP | No |
| araC | XylR (two sites) | No |