Appendix 3—table 3. Example energy matrix.

This matrix is in arbitrary units, and the process to obtain absolute units (in $k_{B}T$) is described in Appendix 3 Section 'Inference of scaling factors for energy matrices'.

Pos	A	C	G	T
0	−0.01	−0.01	−0.01	0.03
1	0.002	0.05	−0.06	0.008
2	−0.0002	−0.04	0.008	0.03
3	−0.02	0.02	−0.01	0.01