Table 2.
MinION barcoding test run.
| Genetic barcode | Target species | Top consensus GeneBank hit accession | Number of reads assigned to barcode | Average error rate for raw reads (%) | Average error rate for filtered reads (%)a | Consensus match to target sequence (%) | ||
|---|---|---|---|---|---|---|---|---|
| X 400 coverage | X 100 coverage | X 10 coverage | ||||||
| 16S | Escherichia coli | CP027701.1 | 11,107 | 12.18 | 10 | 100 | 99.9 | 98.4 |
| ITS | Saccharomyces cerevisiae | CP022977.1 | 6001 | 10 | 9 | 100 | 99.7 | 98.1 |
| COI | Homo sapiens | MG660736.1 | 6748 | 10.29 | 9.4 | 100 | 100 | 99.4 |
| 18S | Gracilaria Ceara | AF468890.1 | 22,470 | 9.86 | 8.3 | 100 | 99.9 | 99.1 |
| tufA | Ulva fasciata | NC_042255.1 | 6951 | 7.9 | 6.6 | 100 | 99.9 | 98.8 |
aSequences were filtered based on read quality (-min_qual_mean 10).