Table 2.

Differentially Expressed lncRNAs in HCC Ppatients between with Cirrhosis and without Cirrhosis

	Top 20 up-regulated lncRNAs				Top 20 down-regulated lncRNAs
	logFC	P-Value	FDR		logFC	P-Value	FDR
MEG3	1.911879	2.84E-09	2.02E-06	AP000439.3	-5.46056	7.87E-14	2.24E-10
LINC01549	1.197689	0.000727	0.037371	AC139749.1	-3.78362	4.00E-12	5.70E-09
C5orf66	1.025117	1.57E-05	0.002357	AC002398.2	-3.23053	4.09E-11	4.67E-08
AC091182.1	1.341751	6.41E-09	4.06E-06	AC023906.5	-2.39771	6.05E-11	5.75E-08
MEG9	2.83443	4.49E-14	2.24E-10	LINC01474	-2.24764	2.67E-10	2.18E-07
BX649601.1	1.124886	1.16E-07	5.09E-05	AC139769.2	-3.10429	2.62E-08	1.49E-05
LINC01214	1.051004	2.18E-06	0.000485	AC104031.1	-1.95623	5.05E-08	2.62E-05
HOXA11-AS	1.473062	3.43E-05	0.004256	AC069431.1	-1.89819	2.27E-07	8.40E-05
AC098869.2	2.185602	2.85E-12	5.43E-09	TH2LCRR	-1.58174	2.36E-07	8.40E-05
LINC01133	1.321311	7.40E-05	0.007962	AL359853.1	-2.33083	3.69E-07	0.000117
LINC01882	1.620611	0.00011	0.010802	Z93930.3	-1.21647	5.25E-07	0.000158
AL117190.1	2.177359	7.04E-08	3.35E-05	SH3RF3-AS1	-1.45216	6.98E-07	0.000199
LINC02086	1.774533	9.62E-06	0.001567	AC148476.1	-2.04117	9.03E-07	0.000245
Z99289.1	1.010418	0.000601	0.032977	AC007099.1	-2.74984	1.22E-06	0.000304
HOXA-AS3	1.220775	0.000419	0.028584	AP006285.1	-1.77935	1.23E-06	0.000304
TRBV11-2	1.045662	0.001038	0.047752	LINC02334	-2.29279	2.05E-06	0.000485
LINC00487	1.137215	0.000192	0.016844	MIR9-3HG	-1.90608	2.24E-06	0.000485
AC122108.2	1.167812	7.02E-05	0.007735	LINC01970	-1.30815	2.29E-06	0.000485
AC073115.1	1.884735	1.37E-07	5.57E-05	AL445493.2	-1.97111	2.40E-06	0.000489
AC104051.2	1.141559	0.000478	0.029645	ADIRF-AS1	-1.12681	2.62E-06	0.000516

logFC, log2fold change; FDR, false discovery rate