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. 2020 Oct 19;16(10):e9518. doi: 10.15252/msb.20209518
Reagent or resource Source Identifier
Antibodies
Anti‐ERK1/2, Rabbit CST 9102
Anti‐ERK1/2, Mouse CST 4696
Anti‐phospho‐ERK1/2(Y202/Y204), Rabbit CST 4370
Anti‐MEK1/2, Mouse CST 4694
Anti‐phospho‐MEK1/2(S217/S221), Rabbit CST 9121
Anti‐CRAF, Mouse CST 12552
Anti‐BRAF, Mouse Invitrogen MA5‐15495
Anit‐panRAS, Mouse Cytoskeleton AESA02
Anti‐phospho‐AKT(S473) CST 4060
Anti‐beta‐Actin Sigma‐Aldrich A2228
Anti‐Tubulin CST 3873
Anti‐GAPDH CST 2118
IRDye 800CW Donkey anti‐Rabbit IgG Licor 925‐32213
IRDye 800CW Donkey anti‐Mouse IgG Licor 926‐32212
IRDye 680RD Donkey anti‐Rabbit IgG Licor 926‐68073
IRDye 680RD Donkey anti‐Mouse IgG Licor 925‐68072
Chemicals, peptides, and recombinant proteins
Amphiregulin Peprotech 100‐55B
EGF Peprotech AF‐100‐15
FGF Peprotech 100‐18B
HGF Peprotech 100‐39
IGF‐I Peprotech 100‐11
PDGF‐AB Peprotech 100‐00AB
ARS‐853 MedChemExpress HY‐19706
PD0325901 Selleck Biochemicals S1036
SCH772984 Selleck Biochemicals S7101
Blasticidin Corning 30‐100‐R1
Bovine serum albumin Sigma‐Aldrich A7906
Collagen I, rat tail Life Technologies A10483‐01
Dextrose Fisher C6H1206
l‐Glutamine Life Technologies 25030‐081
Puromycin dihydrochloride Sigma‐Aldrich P8833
DMEM Life Technologies 11965‐092
Fetal bovine serum Gemini Bio‐products 100‐106
Penicillin streptomycin Life Technologies 15070‐063
0.25% Trypsin‐EDTA Life Technologies 25200‐056
Tris Base Fisher BP152
Glycine (Crystalline Powder) Fisher BP381
Sodium dodecyl sulfate (SDS), Micropellets Fisher BP8200500
Ponceau S solution, suitable for electrophoresis, 0.1% (w/v) in 5% acetic acid, 1L Sigma‐Aldrich P7170‐1L
Bromophenol blue Sigma‐Aldrich B5525
Dithiothreitol Fisher BP172
Critical commercial assays
Amaxa MEF 2 Nucleofector kit Lonza VPD‐1005
Experimental models: cell lines
RAS‐less MEF (Mouse Embryonic Fibroblast) cell lines with transduced human RAS or BRAFV600E Gift from Dom Esposito, Frederick National Laboratory
HRASWT EKAR3 This paper Available on request
KRAS4BWT EKAR3 This paper Available on request
NRASWT EKAR3 This paper Available on request
KRASG12C EKAR3 This paper Available on request
KRASG12D EKAR3 This paper Available on request
KRASG12V EKAR3 This paper Available on request
KRASQ61R EKAR3 This paper Available on request
BRAFV600E EKAR3 This paper Available on request
Recombinant DNA
Plasmid: pPBJ‐EKAR3nls‐puro Sparta et al (2015) Addgene # forthcoming
Software and Algorithms
NIS Elements AR ver. 4.20 Nikon RRID:SCR_014329
Bio‐Formats ver. 5.1.1 (May 2015) OME RRID:SCR_000450
uTrack 2.0 Jaqaman et al (2008) http://www.utsouthwestern.edu/labs/danuser/software/
MATLAB Mathworks SCR_001622
Other
Glass‐Bottom Plates, #1.5 cover glass Cellvis P24‐1.5H‐N, P96‐1.5H‐N
12% Mini‐PROTEAN® TGX™ Precast Protein Gels, 15‐well, 15 μl Bio‐Rad 4561046
SuperSep Phos‐tag gels (50 μmol/l), 12.5%, 17 wells Wako‐Chem 195‐17991
GE Healthcare Amersham™ Protran™ NC Nitrocellulose Membranes: Rolls, 0.1 μm pore Fisher 45‐004‐000