Table 1.
Nuclear genome statistics: Parameters and content of the nuclear genome assembly of Trichoderma lixii MUT3171.
| Parameter | Estimated Value | Total Genome Coverage | ||
|---|---|---|---|---|
| Assembly size | ~40.89 Mbp | - | ||
| Number of scaffolds | 2142 | - | ||
| G+C content | ~49.4% | - | ||
| Genome gaps (Ns) | ~0.005% (2045 bp) | - | ||
| N50/L50 | 77,948 kbp/156 scaffolds | - | ||
| Number of genes | 11,923 | - | ||
| tRNAs | 182 | - | ||
| rRNAs | 8 s | 18 s | 28 s | - |
| 44 | 1 | 1 | - | |
| Small RNAs | 14 | - | ||
| Secreted proteins | 472 | - | ||
| Satellites | 14 | 0.02% | ||
| Simple repeats | 8820 | 0.89% | ||
| Low complexity regions | 1528 | 0.19% | ||
| Unclassified transposon sequences | 1499 | 0.71% | ||
| Retrotransposon sequences | SINEs | LINEs | LTR (Gypsy/DIRS1) | 0.83% |
| 15 | 226 | 536 | ||
| DNA transposon sequences | hobo-Activator | Tc1-IS630-Pogo | Others | 0.18% |
| 44 | 49 | 167 | ||