Figure 1.

Phylogenetic trees were constructed for the HIV-1 RT (A), PR (B), env (C), and gag genes newly sequenced in the present study (D). The corresponding viral genes of reference HIV-1 strains representing subtypes A1, A2, B, C, D, and G as well as CRF01_AE (01_AE), CRF02_AG (02_AG), CRF15_01B (15_01B), CRF33_01B (33_01B), and CRF34_01B (34_01B) were included in the analyses (shown in bold letters). Sequence IDs are presented as a GenBank accession number, sample ID, or the ID of the reference HIV-1 strain, and the subtype or CRF of the reference strain (shown in parentheses) in that order. Bootstrap values were shown if they were >70.

Phylogenetic tree analysis of HIV-1 RT, PR, env, and gag gene sequences collected in Pontianak, Indonesia