Table 3. HIV-1 subtyping.
| Sample ID | Treatment | Subtype/CRF assignment | Subtyping | |||
|---|---|---|---|---|---|---|
| PR gene | RT gene | Env gene | Gag gene | |||
| BR1 | Non-ART | CRF02_AG* | CRF02_AG | NA** | NA | NA |
| BR2 | Non-ART | CRF01_AE | CRF01_AE | CRF01_AE | NA | NA |
| BR3 | Non-ART | B | B | NA | NA | NA |
| BR4 | Non-ART | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE |
| BR5 | Non-ART | CRF02_AG | NA | NA | CRF02_AG | NA |
| BR6 | Non-ART | B | NA | NA | NA | B |
| BR8 | Non-ART | NA | NA | NANN | NA | NA |
| BR7 | Non-ART | CRF02_AG | NA | NA | CRF02_AG | NA |
| BR9 | Non-ART | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE | NA |
| BR10 | Non-ART | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE |
| BR11 | Non-ART | CRF01_AE | CRF01_AE | NA | NA | NA |
| L1 | On ART | NA | NA | NA | NA | NA |
| L2 | On ART | CRF01_AE | CRF01_AE | NA | CRF02_AG | CRF01_AE |
| L3 | On ART | CRF01_AE | CRF01_AE | CRF01_AE | CRF02_AG | CRF01_AE |
| L4 | On ART | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE |
| L5 | On ART | NA | NA | NA | NA | NA |
| L6 | On ART | CRF01_AE | CRF01_AE | CRF01_AE | NA | NA |
| L7 | On ART | CRF01_AE | NA | NA | NA | CRF01_AE |
| L8 | On ART | NA | NA | NA | NA | NA |
| L9 | On ART | CRF01_AE | NA | CRF01_AE | CRF01_AE | NA |
| L10 | On ART | B | NA | NA | NA | B |
| L11 | On ART | CRF02_AG | NA | NA | CRF02_AG | NA |
| L12 | On ART | CRF02_AG | NA | NA | CRF02_AG | NA |
| L13 | On ART | CRF01_AE | NA | NA | CRF01_AE | NA |
| L14 | On ART | CRF01_AE | NA | NA | NA | CRF01_AE |
| L15 | On ART | CRF01_AE | NA | NA | CRF01_AE | NA |
| L16 | On ART | CRF01_AE | CRF01_AE | CRF01_AE | CRF01_AE | NA |
| L17 | On ART | CRF01_AE/B*** | CRF01_AE | NA | B | NA |
| L18 | On ART | CRF01_AE | NA | CRF01_AE | CRF01_AE | CRF01_AE |
| L19 | On ART | CRF01_AE | NA | CRF01_AE | NA | NA |
*
Recombinant form of HIV-1 containing the viral gene fragments of subtypes A and G.
**
Not available due to the failure of PCR.
***
Recombinant form of HIV-1 containing the viral gene fragments of CRF01_AE and subtype B.