Table 4.

Differentially methylated CpG sites in the brain.

Probe	Raw p-value [nuclei]	FDR adjusted p-value [nuclei]	Methylation Difference % [nuclei]	Raw p-value [glia]	FDR adjusted p-value [glia]	Methylation Difference % [glia]
cg02249030	0.71	0.80	0.51	0.78	0.78	0.11
cg02935298	0.64	0.80	0.32	0.17	0.38	0.91
cg03920003	0.80	0.80	0.38	0.09	0.38	1.7
cg09312254	0.32	0.80	0.23	0.70	0.78	0.081
cg13518442	0.76	0.80	0.16	0.77	0.78	0.36
cg18081313	0.54	0.80	0.72	0.42	0.63	1.3
cg23415434	0.66	0.80	0.33	0.12	0.38	2.8
cg23897356	0.062	0.28	0.35	0.23	0.41	0.21
cg24627299	0.0041	0.037	2.6	0.021	0.19	5.5

P-values were obtained using linear regression models, contrasting DNAm levels at the nine CpGs and the yes/no depression diagnosis, together with covariates age and sex.