Table 1.

Metrics of repeats on five datasets

Species	Method	Num	Size (kbp)	Max/min	N50 (bp)	N90 (bp)
Drosophila melanogaster	RepARK CLC	818	518	6833/200	1040	255
	RepARK Velvet	4561	873	7587/57	285	87
	REPdenovo	52	61	8339/102	2843	397
	RepAHR	2647	1350	12,787/56	1350	98
Saccharomyces cerevisiae	RepARK CLC	545	291	8271/200	626	266
	RepARK Velvet	1457	394	9129/57	423	111
	REPdenovo	3	0.72	265/213	258	213
	RepAHR	392	219	9523/128	2089	183
Acromyrmex echinatior	RepARK CLC	485	249	8272/200	659	240
	RepARK Velvet	3931	559	5547/57	160	68
	REPdenovo	249	99	2143/100	597	182
	RepAHR	2699	514	10,701/88	285	86
$Homosapiens$ chr14	RepARK CLC	105	29	594/201	273	216
	RepARK Velvet	846	106	574/57	140	80
	REPdenovo	14	9	5545/101	5545	211
	RepAHR	1738	219	2177/45	213	61
$Musmusculus$	RepARK CLC	3839	1835	17,062/200	565	236
	RepARK Velvet	47,232	2302	16,526/57	129	57
	REPdenovo	9376	12,652	14,827/100	3129	848
	RepAHR	77,891	19,201	28,893/150	503	222

${}^{\prime }Nu{m}^{\prime }$ indicates the number of repeats. ${}^{\prime }Siz{e}^{\prime }$ indicates the total length of all repeats. ${}^{\prime }Ma{x}^{\prime }$ represents the length of the longest segment in the repeats. ${}^{\prime }Mi{n}^{\prime }$ represents the length of the shortest segment in the repeats. ${}^{\prime }N50orN{90}^{\prime }$ represents the length of the longest segment such that all the segments longer than this segment cover at least 50% or 90% of the total length of the assemblies