Table 1.
High quality clean reads compared with the reference genome
| Sample | Total reads | Unmapped reads | Unique mapped reads | Multiple mapped reads | Mapping ratio |
|---|---|---|---|---|---|
| CK-1 | 63,612,526 | 6,924,650 (10.89%) | 56,364,212 (88.61%) | 323,664 (0.51%) | 89.11% |
| CK-2 | 102,560,584 | 12,194,879 (11.89%) | 89,682,285 (87.44%) | 683,420 (0.67%) | 88.11% |
| CK-3 | 86,188,102 | 10,670,110 (12.38%) | 74,975,168 (86.99%) | 542,824 (0.63%) | 87.62% |
| LJ-1 | 91,490,442 | 11,614,304 (12.69%) | 79,452,098 (86.84%) | 424,040 (0.46%) | 87.31% |
| LJ-2 | 147,560,076 | 17,994,743 (12.19%) | 128,778,345 (87.27%) | 786,988 (0.53%) | 87.81% |
| LJ-3 | 80,368,368 | 10,384,074 (12.92%) | 69,600,696 (86.60%) | 383,598 (0.48%) | 87.08% |