Table 2. Summary of LAMP-sequencing results.

The cross tabulation of RT-qPCR and RT-LAMP assay results shown in Table 1 have been split into samples where sequencing of RT-LAMP reaction products (LAMP-sequencing) was positive (Pos), negative (Neg), or inconclusive (too few reads) (see also Fig. 4).

					RT-LAMP
				CT	Pos	Neg	Sum
LAMP- sequencing	Pos	RT-qPCR	Pos	0–25	49	0	49
				25–30	28	0	28
				30–35	4	0	4
				35–40	0	0	0
			Neg	Neg	0	0	0
	Neg	RT-qPCR	Pos	0–25	0	0	0
				25–30	0	2	2
				30–35	0	16	16
				35–40	0	16	16
			Neg	Neg	2	637	639
	Too few reads	RT-qPCR	Pos	0–25	2	0	2
				25–30	0	0	0
				30–35	0	0	0
				35–40	0	0	0
			Neg	Neg	0	12	12
				Sum	85	683	768