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. 2020 Jun 9;36(16):4523–4524. doi: 10.1093/bioinformatics/btaa561

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — CellNOpt pipeline with packages and features. Perturbation data are combined with prior knowledge of signalling interactions. Different modules can be used for model building: CellNOptR (Boolean logic models), CellNOpt-MaBoSS (stochastic simulations), CNORprob (probabilistic formalism), CNORode (logic-based ODEs). New packages and features are highlighted with green background and red text. (Color version of this figure is available at Bioinformatics online.)