REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit polyclonal anti-UCC1 | This paper | N/A |
Goat anti-Rabbit IgG (H+L) Secondary Antibody, DyLight 633 | Invitrogen | SA5-10034, RRID:AB_2556614 |
Chemicals, Peptides, and Recombinant Proteins | ||
MS basal salt mixture, powder | Sigma-Aldrich | M5524 |
Agar | Sigma-Aldrich | P49805, CAS: 94-53A7921, CASS: 9002-18-01 |
Piperonylic acid | Sigma-Aldrich | P49805, CAS: 94-53-1 |
guanidine-HCl | Sigma-Aldrich | G7294 |
MES | Sigma-Aldrich | M8250 CAS: 1266615-59-1 |
EDTA | Sigma-Aldrich | EDS, CAS:60-00-4 |
Phenol:chloroform:isoamylalcohol, 25:24:1 | Sigma-Aldrich | P2069 |
Acetic acid | Sigma-Aldrich | A6283 CAS: 64-19-7 |
Sodium acetate | Sigma-Aldrich | S2889 CAS, 127-09-3 |
DNase I, Amplification Grade | Invitrogen | 18068015 |
Nitric acid Primar Plus | Fisher Chemicals | N/2272/PB17 CAS: 7697-37-2 |
Propidium iodide | Invitrogen | P1304MP, CAS: 25535-16-4 |
Calcofluor White | Polysciences, | CAT#4359 |
Basic Fuchsin | Fluka, Analytical | CAS: 58969-01-0 |
Auramine-O | Sigma-Aldrich | SLA 1027 CAS: 2465-27-2 |
paraformaldehyde | Sigma-Aldrich | P6148, CAS:3052-89-4 |
xylitol | Sigma-Aldrich | W507930, CAS: 87-99-0 |
Sodium deoxycholate | Sigma-Aldrich | D6750, CAS: 302-95-4 |
urea | Sigma-Aldrich | U5378, CAS:57-13-6 |
Fluorol Yellow 088 | Santa Cruz Biotechnology | SC215052, CAS: 81-37-8 |
PIPES | Sigma-Aldrich | P-3768, CAS: 76836-02-7 |
EGTA | Sigma-Aldrich | E3889, CAS: 67-42-5 |
MgSO4·7H2O | Sigma-Aldrich | 63138, CAS:10034-99-8 |
KOH | Sigma-Aldrich | P5958, CAS:1310-58-3 |
Methanol | Sigma-Aldrich | 82762, CAS:67-56-1 |
Driselase | Sigma-Aldrich | D9515, CAS:85186-71-6 |
Macerozyme | Duchefa | cat. N M8002.0010 |
IGEPAL CA-630 | Sigma-Aldrich | I8896, CAS:9002-93-1 |
DMSO | Sigma-Aldrich | D8418, CAS: 67-68-5 |
albumin fraction V BSA | Sigma-Aldrich | 10735078001 |
Critical Commercial Assays | ||
Qubit | Invitrogen | Q10210 |
TapeStation | Aglent | G2991A |
Lexogen Quant Seq 3′ mRNA Seq (FWD) Library Prep Kit | Lexogen | 015 |
Experimental Models: Organisms/Strains | ||
Arabidopsis thaliana Columbia 0 accession (Col-0) | ||
ucc1.1, CRISPR line in Col-0 | This study | N/A |
ucc1.2, CRISPR line in Col-0 | This study | N/A |
sgn3.3, t-DNA line in Col-0 | [5] | SALK_043282 |
myb36.2, t-DNA line in Col-0 | [2] | GK-543B11 |
casp1.1 casp3.1, t-DNA line in Col-0 | [7] | N/A |
pCASP1::CASP1-GFP, line in Col-0 | [7] | N/A |
pESB1::ESB1-mCherry, line in Col-0 | [6] | N/A |
ucc2.1, t-DNA line in Col-0 | N/A | GK_250F04 |
ucc2.2, t-DNA line in Col-0 | N/A | salk_049638 |
Rbohf, t-DNA line in Col-0 | [15] | salk_059888 |
pUCC1::mCherry-UCC1, line in Col-0 | This study | N/A |
pUCC1::GFP-GUS, line in Col-0 | This study | N/A |
pUCC1::UCC1, line in Col-0 | This study | N/A |
Oligonucleotides | ||
For pUCC1::mCherry-UCC1 GGGGACAACTTTGTATAGAAAAGTTG GTTGAATTTCGTAAGAGTTAGG |
This study | N/A |
For pUCC1::mCherry-UCC1 GGGGACTGCTTTTTTGTACAAACTTG CATGGTCAGTAGCTACTGTTAAACC |
This study | N/A |
For pUCC1::mCherry-UCC1 GGGGACAGCTTTCTTGTACAAAGTG GTAACCATTGGTGGTCCTAGTGGTTGG |
This study | N/A |
For pUCC1::mCherry-UCC1 GGGGACAACTTTGTATAATAAAGTTG ACCCATATAAATTGTAATAATGTATTATAAAC |
This study | N/A |
For pUCC1::UCC1 GGGGACAACTTTGTATAGAAAAGTTG GTTGAATTTCGTAAGAGTTAGG |
This study | N/A |
For pUCC1::UCC1 GGGGACTGCTTTTTTGTACAAACTTGG ATGACATATGGTGTCAAATGTGTG |
This study | N/A |
For pUCC1::UCC1 GACAAGTTTGTACAAAAAAGCAGGCTCG GCACAAAACATCATCATCTCTTG |
This study | N/A |
For pUCC1::UCC1 GGGGACCACTTTGTACAAGAAAGCTGGGT CCCATATAAATTGTAATAATGTATTATAAAC |
This study | N/A |
For pUCC1::GFP-GUS GGGGACAAGTTTGTACAAAAAAGCAGGCT GTTGAATTTCGTAAGAGTTAGG |
This study | N/A |
For pUCC1::GFP-GUS GGGGACCACTTTGTACAAGAAAGCTGGGT ATGACATATGGTGTCAAATGTGTG |
This study | N/A |
Recombinant DNA | ||
pUCC1::mCherry-UCC1 | This study | N/A |
pUCC1::GFP-GUS | This study | N/A |
pEN-L1-mCherry-L2 | VIB [34], | https://gatewayvectors.vib.be/collection/pen-l1-mcherry-l2 |
pB7m34GW,3 | VIB [34], | https://gatewayvectors.vib.be/collection/pb7m34gw0 |
pH7m24GW | VIB [34], | https://gatewayvectors.vib.be/collection/ph7m24gw2 |
pBGWFS7 | VIB [35], | https://gatewayvectors.vib.be/collection/pbgwfs7 |
pUCC1::UCC1 | This study | N/A |
pHEE401 | [36] | Addgene Plasmid # 71286 |
Software and Algorithms | ||
Fiji | [37] | N/A |
R | The R Project for Statistical Computing | N/A |
PlotTwist | [38] | N/A |
RStudio | RStudio | N/A |