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. 2020 Oct 7;7:482637. doi: 10.3389/fvets.2020.482637

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Copyright © 2020 Mandal, Jiang, Wideman, Lohrmann and Kwon.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Overall beta diversity across sites and ages of chickens. (A,C,E) Principal coordinate analysis (PCoA) plots of different sites of chickens measured by unweighted, weighted UniFrac, and Bray Curtis dissimilarity distance at an even subsampling depth of 600 sequences/sample. (B,D,F) Distance of ceca at day 1 to respective sites. Boxplot displays median with whisker representing 2.5–97.5 percentile. Samples were analyzed by t-test with Bonferroni correction. *p < 0.05, ***p < 0.001, ****p < 0.0001.