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. 2020 Oct 22;334:109300. doi: 10.1016/j.cbi.2020.109300

Table 4.

AutoDock-predicted binding energies (kcal/mol) for the binding of the CO, SA, and CH to three representative amyloid tetrameric models obtained in the previous simulation study [62] (models 1, 2, and 3 correspond to tetramers 1, 3, and 5 from the mentioned work, respectively).


Binding Mode
1-42 tetramer 1
1-42 tetramer 2
1-42 tetramer 3
CO SA CH CO SA CH CO SA CH
1 −9.06 −9.97 −9.72 −9.36 −9.52 −9.26 −8.21 −10.45 −9.81
2 −8.48 −9.89 −8.93 −8.84 −9.46 −9.05 −7.94 −8.44 −8.43
3 −7.56 −9.14 −8.78 −8.80 −9.13 −7.91 −7.24 −8.26 −8.32
4 −7.51 −7.19 −7.28 −8.34 −7.42 −7.02 −7.96 −7.57
5 −6.43 −7.13 −7.25 −7.52 −7.33 −7.00 −7.68 −7.50
6 −5.77 −6.55 −7.04 −6.96 −6.80 −6.88
7 −6.55 −6.50
8 −6.01 −6.48