Table 1. Detailed results of infectious patients’ samples detected by NGS and culture method.
| Sample ID | Culture | NGS | |||
|---|---|---|---|---|---|
| Bacteria and fungi | Viruses | Bacteria and fungi | Viruses | ||
| 19PH01 | N | N | Massilia timonae, Mtc | N | |
| 19PH02 | N | N | Neisseria mucosa, Neisseria flavescens, streptococcus, Rothia mucilaginosa, Prevotella, HPI, Mtc | EBV, CMV | |
| 19PH03 | Candida albicans | N | Prevotella melaninogenicus, Veillonella parvula, Actinomyces odontolyticus, Campylobacter concisus | N | |
| 19PH04 | N | N | Mtc, Haemophilus influenzae, Haemophilus aegyptius | N | |
| 19PH05 | Kp | N | Rothia mucilaginosa, Rothia dentocariosa, Veillonella parvula, Capnocytophaga gingivalis, Mtc, Mycoplasma orale, streptococcus, actinomycetes, Capnocytophaga gingivalis | HHV-EBV, HSV1 | |
| 19PH06 | CRAB Kp, Pseudomonas aeruginosa, Candida albicans | N | HPI, Haemophilus haemolyticus, rothia mucilaginosa, Capnocytophaga gingivalis, Mtc | N | |
| 19PH07 | Candida albicans | N | Prevotella melaninogenicus, Rothia mucilaginosa, Actinomycetes, Mtc | N | |
| 19PH08 | Pantoea agglomerans, Ochrobactrum anthropi | N | Mtc, Veillonella atypica Prevotella | EBV | |
| 19PH09 | N | N | Mtc, Haemophilus influenzae | N | |
| 19PH10 | Candida albicans | N | Actinomyces odontolyticus, Rothia mucilaginosa, Neisseria flavescens, Veillonella atypica, Prevotella salivae, Candida albicans, Mtc | EBV | |
| 19PH11 | N | N | Mtc, Prevotella melaninogenicus, Prevotella, Streptococcus oralis, Fusobacterium nucleatum, Porphyromonas sordellii | N | |
| 19PH12 | Mycete | N | Mtc, Aspergillus niger, Aspergillus brasiliensis, Neisseria sicca, Neisseria macaque, Streptococcus parasanguinis, Porphyromonas sordellii, Rothia mucilaginosa, Prevotella salivae, Prevotella disiens, Veillonella dispar, Veillonella parvula | N | |
| 19PH13 | N | N | MRSA, Mtc | N | |
| 19PH14 | Pseudomonas aeruginosa, Candida albicans | N | Mtc, Candida tropicalis, Streptococcus mitis, Rothia mucilaginosa, Prevotella melaninogenicus, CRAB, Porphyromonas sordellii, Pseudomonas aeruginosa | N | |
| 19PH15 | Kp | N | Mtc | N | |
| 19PH16 | Candida albicans | N | Mtc | N | |
| 19PH17 | Pseudomonas putida | N | Mtc, Lactobacillus salivarius, Lactobacillus crispatus, Veillonella parvula, Streptococcus gordonii, Rothia mucilaginosa | N | |
| 19PH18 | CRE Kp, Candida albicans | N | Bacteria, Mtc | N | |
| 19PH19 | N | N | Bacteria, Mtc | N | |
| 19PH20 | N | N | N | N | |
NGS, next-generation sequencing; Mtc, Mycobacterium tuberculosis complex; N, none; Kp, Klebsiella pneumoniae; CRAB, Carbapenem-resistant Acinetobacter baumannii; HPI, Haemophilus parainfluenzae; MRSA, Methicillin-resistant Staphylococcus aureus; CRE, carbapenem-resistant Enterobacteriaceae; EBV, Epstein-Barr virus; CMV, cytomegalovirus; HHV-7, Human herpesvirus 7; HSV1, Herpes simplex virus 1.