Table 2.
MOE binding energies S (Kcal mol−1) of best binding pose for compounds 3, 16, 23, 24, 25, 29, 40 and native ligands into 7BQY and 7bV2 (London dG as score function)
| Comp | Protein | Receptor | Distance (Å) | S (London dG) |
|---|---|---|---|---|
| 3 | 7BQY | Glu166-Gln189-Gly143-Ser144 | 2.9, 2.9, 3.2, 3.2 | − 8.3 |
| 7BV2 | Arg553-Arg553-Arg553-Arg553-Arg624-Ser759 | 3.1, 3.2, 3.2, 2.7, 3.2, 2.9 | − 8.7 | |
| 16 | 7BQY | Glu166-Glu166-His164-Gln189-Gly143-Thr26 | 3.3, 4.5, 3.1, 4.2, 3.7, 2.6 | − 9.1 |
| 7BV2 | Arg553-Arg553-Arg553-Arg553-Arg553-Arg553-Asp623-Asp760-Ser814 | 2.9, 3.6, 3.8, 2.9, 3.0, 3.5, 3.1, 2.9, 2.8 | − 8.5 | |
| 23 | 7BQY | Glu166-Glu166-Glu166-Glu166-Glu166-phe140-Gln189-Met49-Glu47-Glu47-Glu47-Glu47-Glu47-Glu47 | 2.99-3.01-3.79-3.26-3.9-3.26-3.13-4.06-3.3-3.3-3.52-2.9-2.9-3.6 | − 9.0 |
| 7BV2 | Arg553-Arg553-Thr680- Asp623-Asp623-Asp623-Asp623-Asp684-Ser682 | 2.97, 2.83, 3.19, 3.38, 3.38, 3.24, 3.24, 2.9, 2.87 | − 8.11 | |
| 24 | 7BQY | Glu166-Glu166-Glu166-Glu166-Glu166-Glu166-phe140-Gly143-Gln189-Gln189 | 3.4, 3.4, 3.2, 3.6, 3.9, 2.7, 3.0, 2.8, 3.2, 3.0 | − 8.5 |
| 7BV2 | Thr680-Ser682-Arg553-Cys813-Cys813-Leu758-Asp618-Asp618-Asp618-Asp618-Asp760-Asp760-Asp760-Asp760-Asp760-Asp760-Asp760 | 3.1, 3.6, 3.6, 3.6, 3.6, 4.2, 2.9, 3.8, 3.5, 2.8, 2.8, 3.5, 3.5, 3.0, 3.9, 3.0, 2.9, 2.9 | − 8.3 | |
| 25 | 7BQY | Glu166-Thr190-Asn119 | 3.9, 2.9, 3.0 | − 7.9 |
| 7BV2 | Asp760-Arg553-Arg553-Lys621 | 3.0, 2.8, 3.0, 3.8 | − 8.2 | |
| 29 | 7BQY | Glu166-Gln192-His41-Cys145-His41 | 2.8, 3.2, 3.1, 3.4, 3.1 | − 7.7 |
| 7BV2 | Arg553-Arg553-Arg553-Arg553-Arg553-Arg553-Arg553-Arg624-Arg624 | 2.9, 2.9, 3.1, 3.2, 3.4, 3.7, 2.8, 2.9, 2.9 | − 8.3 | |
| 40 | 7BQY | Ser144-Gly143-Cys145-Gln189 | 3.3, 3.1, 3.5, 2.7 | − 7.9 |
| 7BV2 | Arg553-Arg553-Asp760-Arg836 | 3.2, 3.0, 3.2, 4.1 | − 8.2 | |
| Ligands | 7BQY | Glu166-Glu166-Glu166-Gln189-His163-His164-Cys145-Gln189-Thr190-Ala191-Thr26-Thr25 | 3, 2.7, 2.6, 3.2, 2.5, 3.0, 3.1, 3.2 | − 7.8 |
| 7BV2 | Arg553-Arg553-Arg553-Arg553-Arg553-Asp623-Asn691-Ser759-Ser682 | 2.3, 2.4, 2.3, 2.4, 3.9, 2.3, 2.7, 2.6, 4.1 | − 5.9 |