| AHRR | AHR-arnt heterodimers and AHR-related factors |
| BCL6 | B-cell lymphoma 6 protein |
| BEDF | BED subclass of zinc-finger proteins |
| BRAC | Brachyury gene, mesoderm developmental factor |
| BRE | B recognition element |
| CAGE | Cap analysis gene expression |
| CDXF | Vertebrate caudal related homeodomain protein |
| CLOX | CLOX and CLOX homology (CDP) factors |
| DB | Database |
| DPE | Downstream promoter element |
| E2FF | E2F-myc activator/cell cycle |
| EBOX | E-box binding factors |
| ER | Endoplasmic Reticulum |
| ETSF | Human and murine ETS1 factors |
| FANTOM | Functional ANnotation of the Mammalian Genome |
| FPKM | Fragments Per Kilobase Million |
| FOX | Forkhead (FKH)/ Forkhead box (Fox) |
| GTEX | Genotype-Tissue Expression |
| HEAT | Heat shock factors |
| HMG | High-Mobility Group family |
| HOMF | Homeodomain transcription factors |
| Inr | Initiator Element |
| IRFF | Interferon regulatory factors |
| KLFS | Krueppel-like transcription factors |
| LBXF | Ladybird homeobox (lbx) gene family |
| MEF3 | MEF3 binding sites |
| MYBL | Cellular and viral myb-like transcriptional regulators |
| NEUR | NeuroD, Beta2, HLH domain |
| NRF1 | Nuclear respiratory factor 1 |
| PBXC | PBX-MEIS complexes |
| SMAD | Vertebrate SMAD family of transcription factors |
| SOHLH | Spermatogenesis and oogenesis basic helix-loop-helix |
| TF2B | RNA polymerase II transcription factor II B |
| TFBSs | Transcription Factor Binding Sites |
| TPM | Transcripts Per kilobase Million |
| TSS | Transcription Start Site |
| VDAC | Voltage-Dependent Anion selective Channel |
| XBBF | X-box binding factors |
| ZFXY | Zfx and Zfy-transcription factors |