| CD | Cluster of Differentiation |
| anti-CCP | anti-Cyclic Citrullinated Peptide antibodies |
| RF | Rheumatoid Factor |
| ACE | Angiotensin Converting Enzyme |
| TCR | T-Cell Receptor |
| TH1 | Type 1 Helper T cells |
| TNF-α | Tumor Necrosis Factor-α |
| IL-2 | Interleukin-2 |
| IL-12 | Interleukin-12 |
| M1 | classically activated macrophages |
| IFN-γ | Interferon-γ |
| IHC | Immunohistochemistry |
| MLN | Mesenteric Lymph Nodes |
| BAL | Bronchoalveolar lavage |
| ILD | Interstitial Lung Diseases |
| MIP-1α | Macrophage Inflammatory Protein-1α |
| CXCL9 | C-X-C motif ligand 9 chemokine |
| CXCL10 | C-X-C motif ligand 10 chemokine |
| CXCL11 | C-X-C motif ligand 11 chemokine |
| CXCR3 | C-X-C Chemokine Receptor Type 3 |
| CCR5 | C-C Chemokine Receptor Type 5 |
| IL-12R | Interleukin-12 Receptor |
| IL-18R | Interleukin-18 Receptor |
| sIL-2R | soluble Interleukin-2 Receptor |
| M2 | alternatively activated macrophages |
| mRNA | messenger RNA |
| Lck | lymphocyte-specific tyrosine kinase |
| PKC-θ | Protein Kinase C-theta |
| NF-κB | Nuclear Factor kappa B |
| CTLA-4 | Cytotoxic T Lymphocyte Antigen-4 |
| NF-AT | Nuclear Factor of Activated T cells |
| CD40L | CD40 Ligand |
| PD-1 | Programmed Death-1 |
| TH2 | Type 2 Helper T cells |
| TARC | Thymus-and-Activation-Regulated Chemokine |
| CCR4 | C-C Chemokine Receptor Type 4 |
| GATA-3 | GATA-binding protein-3 |
| Ig | Immunoglobulin |
| IL-4 | Interleukin-4 |
| IL-13 | Interleukin-13 |
| CCL18 | C-C motif ligand 18 chemokine |
| SAA | Serum Amyloid A |
| FEV1 | Forced Expiratory Volume in one second |
| TLR-2 | Toll-like receptor 2 |
| IL-18 | Interleukin-18 |
| CTO | Chitotriosidase |
| TH17 | Type 17 Helper T cells |
| CCR6 | C-C Chemokine Receptor Type 6 |
| IL-17A | Interleukin-17A |
| IL-23 | Interleukin-23 |
| TH17.1 | Type 17.1 Helper T cells |
| STAT1 | Signal Transducer and Activator of Transcription 1 |
| STAT3 | Signal Transducer and Activator of Transcription 3 |
| STAT4 | Signal Transducer and Activator of Transcription 4 |
| TGF-β1 | Transforming Growth Factor-β1 |
| RORγT | RAR-related Orphan Receptor gamma Thymus-specific isoform |
| CXCL8 | C-X-C motif ligand 8 chemokine |
| IL-23R | Interleukin-23 receptor |
| FoxP3 | Forkhead box P3 |
| Treg | Regulatory T cells |
| ICOS | Inducible Co-Stimulator |
| NKT | Natural Killer T cells |
| NK | Natural Killer cells |
| KIR | Killer Cell Immunoglobulin-like Receptor |
| HLA-DR | Human Leukocyte Antigen-DR |
| Tfh | Follicular helper T cells |
| IL-21 | Interleukin-21 |
| CXCR5 | C-X-C Chemokine Receptor Type 5 |
| IL-10 | Interleukin-10 |
| Breg | Regulatory B cells |
| Be | B effector cells |
| BAAF | B cell-Activating Factor |
| IC | Immune complexes |
| TLR-9 | Toll-like receptor 9 |
| MHC | Major histocompatibility complex (MHC) |
| JAK | Janus Kinase |
| mTOR | Mammalian Target of Rapamycin |
| mTORC1 | Mammalian Target of Rapamycin Complex 1 |
| MCPIP1 | Monocyte Chemoattractant Protein-1 Gene |
| mKatG | Mycobacterium tuberculosis catalase–peroxidase |