. 2020 Oct 13;16(10):e1009087. doi: 10.1371/journal.pgen.1009087

Table 1. Sequencing data sets considered for multi-variate quantitative analysis.

Accession	Source	Total RNA-seq Coverage	Reps	Type
GSE125660 [9]	MeCP2 WT Neurons	218.2 × 10⁶ pairs	4	BS-seq, RNA-seq, ChIP-seq
	MeCP2 KO Neurons	214.2 × 10⁶ pairs	4	RNA-seq, ChIP-seq
	MeCP2 OE4x Neurons	217.5 × 10⁶ pairs	4
	MeCP2 OE11x Neurons	220.4 × 10⁶ pairs	4
GSE128186 [17]	WT brain tissue	713.9 × 10⁶ reads	10	BS-seq, RNA-seq
GSE128186 [17]	MeCP2 KO brain tissue	796.5 × 10⁶ reads	10	BS-seq, RNA-seq
GSE64910 [18]	WT mESCs	49.1 × 10⁶ reads	2	BS-seq, RNA-seq
GSE64910 [18]	DNMT-TKO mESCs	50.3 × 10⁶ reads	2	BS-seq, RNA-seq
GSE67867 [19]	WT mESCs	357.3 × 10⁶ reads	3	RNA-seq
GSE67867 [19]	DNMT-TKO mESCs	364.8 × 10⁶ reads	3	RNA-seq
GSE103214 [20]	Pv Neurons (1 week)	37.7 × 10⁶ reads	2	BS-seq, RNA-seq
	Pv Neurons (3 weeks)	27.6 × 10⁶ reads	1
	Pv Neurons (8 weeks)	97.5 × 10⁶ reads	2
	Vip Neurons (1 week)	17.9 × 10⁶ reads	1
	Vip Neurons (3 weeks)	57.9 × 10⁶ reads	2
	Vip Neurons (8 weeks)	45.3 × 10⁶ reads	2
GSE48307 [23] GSE85517 [14]	Promyelocytes	63.5 × 10⁶ reads	1	BS-seq, RNA-seq, ChIP-seq
GSE48307 [23] GSE85517 [14]	Granulocytes	59.7 × 10⁶ reads	1	BS-seq, RNA-seq, ChIP-seq