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. Author manuscript; available in PMC: 2020 Oct 23.
Published in final edited form as: Mol Neurobiol. 2018 Oct 18;56(6):4492–4517. doi: 10.1007/s12035-018-1390-4

Table 3. Summary of Enrichr analyses.

Hits and biological function for Enrichr analyses of panels of clustered upregulated and downregulated genes from iLINCS clustering analysis.

PANELS OF CLUSTERED UPREGULATED GENE ANALYSIS
Analysis Select Targets Function
KEGG Signaling Pathways FOXO, MAPK, Wnt cell metabolism, inflammation, cell growth, mitochondrial function
Protein-Protein Interactions RPS6KA3, MAPK14, GSK3B, CDK1, CUL1, SKP1, PCNA, HDAC1, ESR1 metabolism, cell proliferation, degradation/ubiquitination, chromatin remodeling
Kinases AKT1, MAP2K2, PTK2, ATR, NMUR2, FFAR1 glucose metabolism, cell cycle regulation, energy homeostasis
Transcription Factors WT1, TRIM28, NFIB, NUCKS1, TCF3, ESR1, ESR2, ELK3, CEBPB developmental processes, immune response, estrogen receptors
PANELS OF CLUSTERED DOWNREGULATED GENE ANALYSIS
KEGG Signaling Pathways p53 signaling, HTLV infection, hepatitis B inflammation, impaired immunity, and cell proliferation
Protein-Protein Interactions HDAC2, HDAC1, PCNA, BRCA1, CREBBP, CSNK2A1, NFKB2, MYC Chromatin remodeling/HDAC inhibitors, immunity/cell cycle regulation, ubiquitination
Kinases PPARγ, RXR, PXK, ABL2, RYK, WEE1, LPHN1, NR3C1, GPR37 CNS development, cell cycle progression, cytoskeletal remodeling carbohydrate/fatty acid metabolism, inflammation
Transcription Factors MYC, MYCN, NUCKS1, FOXM1, E2F1, E2F4, POU5F1, EKLF cellular proliferation and cell cycle control, development