Table 2.
Gene set enrichment analysis of target genes based on GO categories (1) cellular component, (2) molecular function and (3) biological processes
| Cellular component | Total annotated genes in this class | No of genes | Percentage of genes | Fold value | p value (Bonferroni method) |
|---|---|---|---|---|---|
| Plasma membrane | 3479 | 13 | 27.08333333 | 1.133555377 | 1 |
| Cytosol | 1178 | 13 | 27.08333333 | 3.347722423 | 0.062047052 |
| Nucleoplasm | 449 | 8 | 16.66666667 | 5.407513651 | 0.077139073 |
| Cytoplasm | 5684 | 32 | 66.66666667 | 1.707072486 | 0.07662906 |
| Nucleus | 5847 | 29 | 60.41666667 | 1.503955596 | 1 |
| Extracellular | 1825 | 15 | 31.25 | 2.493082014 | 0.420115356 |
| Condensed nuclear chromosome | 3 | 1 | 2.083333333 | 101.7128913 | 1 |
| Chromosome passenger complex | 3 | 1 | 2.083333333 | 101.7128913 | 1 |
| Dynein complex | 2 | 1 | 2.083333333 | 152.3163199 | 1 |
| Molecular functions | |||||
| Cytokine activity | 107 | 3 | 6.25 | 10.61912371 | 0.638960909 |
| Methyltransferase activity | 59 | 3 | 6.25 | 19.25694677 | 0.114380528 |
| Lipid kinase activity | 35 | 3 | 6.25 | 32.45793855 | 0.024077901 |
| Protein serine/threonine kinase activity | 301 | 5 | 10.41666667 | 6.283525053 | 0.261224937 |
| Metallopeptidase activity | 101 | 4 | 8.333333333 | 14.9874087 | 0.032794018 |
| Transcription factor activity | 842 | 3 | 6.25 | 1.349571179 | 1 |
| Oxidoreductase activity | 161 | 1 | 2.083333333 | 2.368181983 | 1 |
| Deacetylase activity | 14 | 1 | 2.083333333 | 27.21634411 | 1 |
| Receptor signalling protein tyrosine phosphatase activity | 16 | 1 | 2.083333333 | 23.81642605 | 1 |
| Biological processes | |||||
| Protein metabolism | 1323 | 7 | 14.58333333 | 2.000218678 | 1 |
| Immune response | 576 | 3 | 6.25 | 1.972690983 | 1 |
| Regulation of cell cycle | 57 | 2 | 4.166666667 | 13.30967968 | 1 |
| Signal transduction | 3934 | 18 | 37.5 | 1.728227217 | 1 |
| Cell communication | 3713 | 17 | 35.41666667 | 1.729421214 | 1 |
| Nucleobase metabolism | 2828 | 15 | 31.25 | 2.003652205 | 0.887230111 |
| Apoptosis | 220 | 1 | 2.083333333 | 1.73301188 | 1 |
| Cell growth | 1125 | 1 | 2.083333333 | 0.338912493 | 1 |
| Cell cycle | 22 | 1 | 2.083333333 | 17.32303243 | 1 |