Table 2.
De novo transcriptome assembly and annotation statistics using QUAST
| Metrics | Assembly |
|---|---|
| Total number of contigs | 99,393 |
| Number of contigs (≥ 1000 bp) | 19,901 |
| Number of contigs (≥ 5000 bp) | 136 |
| Number of contigs (≥ 10,000 bp) | 4 |
| Total length (≥ 0 bp) | 68,200,329 |
| Total length (≥ 1000 bp) | 36,600,796 |
| Total length (≥ 5000 bp) | 833,031 |
| Total length (≥ 10,000 bp) | 44,580 |
| # contigs (≥ 500 bp) | 39,135 |
| Largest contig | 13,324 |
| Total length | 50,138,896 |
| GC (%) | 49.92 |
| N50 | 1550 |
| N75 | 955 |
| L50 | 10,673 |
| L75 | 20,929 |
| # N’s per 100 kb | 0 |
| Predicted coding sequences | 149,458 |
| Annotated coding sequences | 110,425 |
| Unannotated coding sequences | 39,034 |
| Total number of annotated contigs | 51,499 |