Table 3.
List of Significant Marker Trait Associations (MTAs) identified under the study during both the years and pooled analysis along with reports of previous findings
| Traits | Year | Marker name | Chromosome number | p_marker value | R2 _ Marker | Reports of QTLs for same or similar traits |
|---|---|---|---|---|---|---|
| Days to fifty % flowering (DFF) | 2015–2016 | RM1148 | 8 | 5.264E–07 | 0.260 | – |
| RM205 | 9 | 6.15E–05 | 0.318 | – | ||
| R11M23 | 11 | 7.23E–05 | 0.087 | – | ||
| 2016–2017 | RM1148 | 8 | 1.01E–08 | 0.323 | – | |
| RM205 | 9 | 6.88E–06 | 0.367 | – | ||
| R11M23 | 11 | 0.0066 | 0.040 | – | ||
| Pooled | RM1148 | 8 | 3.16E–07 | 0.267 | – | |
| R11M23 | 11 | 3.91E–05 | 0.094 | – | ||
| RM205 | 9 | 8.63E–05 | 0.311 | Suh et al. (2005) (qDTH9) | ||
| Total tillers/plant (TTP) | 2015–2016 | RM118 | 7 | 0.00148 | 0.085 | – |
| 2016–17 | RM118 | 7 | 0.0061 | 0.097 | – | |
| Pooled | RM118 | 7 | 0.0024 | 0.112 | – | |
| Panicle length (PL) | 2015–2016 | R12M43 | 12 | 4.22E–04 | 0.107 | – |
| R11M23 | 11 | 0.00190 | 0.053 | – | ||
| 2016–2017 | R12M43 | 12 | 5.73E–04 | 0.103 | – | |
| R11M23 | 11 | 0.0060 | 0.131 | – | ||
| Pooled | R12M43 | 12 | 5.75E–05 | 0.110 | – | |
| R11M23 | 11 | 0.0015 | 0.056 | – | ||
| Fertile spikelets/Plant (FSP) | 2015–2016 | RM234 | 7 | 1.50E–04 | 0.197 | Hua et al. (2002) (gp7b) |
| 2016–2017 | RM234 | 7 | 0.0015 | 0.160 | ||
| Pooled | RM234 | 7 | 1.54E–04 | 0.196 | ||
| Total spikelets/Plant (TSP) | 2015–2016 | R11M23 | 11 | 6.28E–04 | 0.064 | – |
| RM234 | 7 | 7.62E–04 | 0.172 | – | ||
| R1M47 | 1 | 0.00261 | 0.065 | – | ||
| 2016–2017 | RM234 | 7 | 3.14E–04 | 0.187 | – | |
| R11M23 | 11 | 0.0013 | 0.057 | – | ||
| R1M47 | 1 | 0.0056 | 0.057 | – | ||
| Pooled | R11M23 | 11 | 5.53E–04 | 0.066 | – | |
| RM234 | 7 | 5.84E–04 | 0.176 |
Xing et al. (2001) (sp7b & sp7c) Feng et al. (2015) (qSP-7c) |
||
| R1M47 | 1 | 0.0024 | 0.066 | – | ||
| Spikelet fertility % (SF%) | 2015–2016 | RM184 | 10 | 0.00643 | 0.108 | – |
| 2016–2017 | RM184 | 10 | 0.0043 | 0.105 | – | |
| Pooled | RM184 | 10 | 0.0038 | 0.107 | – | |
| Hundred seed weight (HSW) | 2015–2016 | R3M10 | 3 | 0.00610 | 0.040 | – |
| R9M42 | 9 | 0.00610 | 0.040 | – | ||
| 2016–17 | R3M10 | 3 | 0.0061 | 0.140 | – | |
| R9M42 | 9 | 0.0061 | 0.140 | – | ||
| Pooled | R3M10 | 3 | 0.0061 | 0.041 | – | |
| R9M42 | 9 | 0.0061 | 0.041 | – | ||
| Grain yield/Plant (GY) | 2015–2016 | RM7434 | 6 | 0.00179 | 0.102 | – |
| 2016–17 | RM7434 | 6 | 0.0058 | 0.108 | – | |
| Pooled | RM7434 | 6 | 0.0050 | 0.110 | – | |
| Iron content (Fe) | 2015–2016 | RM536 | 11 | 0.00327 | 0.138 | – |
| RM17467 | 4 | 0.00601 | 0.304 | – | ||
| RM484 | 10 | 0.00639 | 0.076 | – | ||
| RM26063 | 11 | 0.00637 | 0.244 | – | ||
| 2016–2017 | RM536 | 11 | 0.0033 | 0.138 | – | |
| RM17467 | 4 | 0.0045 | 0.316 | – | ||
| RM26063 | 11 | 0.0047 | 0.258 | – | ||
| RM484 | 10 | 0.0057 | 0.079 | – | ||
| Pooled | RM536 | 11 | 0.0033 | 0.138 | – | |
| RM17467 | 4 | 0.0056 | 0.310 | – | ||
| RM26063 | 11 | 0.0062 | 0.251 | – | ||
| RM484 | 10 | 0.0065 | 0.077 | – | ||
| Zinc content (Zn) | 2015–2016 | RM44 | 8 | 0.00158 | 0.148 | – |
| RM6839 | 9 | 0.00541 | 0.090 | – | ||
| 2016–2017 | RM44 | 8 | 0.0012 | 0.153 | – | |
| RM6839 | 9 | 0.0047 | 0.092 | – | ||
| Pooled | RM44 | 8 | 0.0014 | 0.150 | – | |
| RM6839 | 9 | 0.0051 | 0.091 | – | ||
| Oleic acid (OA) | 2015–2016 | RM25 | 8 | 0.00595 | 0.134 | – |
| 2016–2017 | RM25 | 8 | 0.0024 | 0.129 | – | |
| Pooled | RM25 | 8 | 0.0021 | 0.131 | – | |
| Linolenic acid (LnA) | 2015–2016 | RM495 | 1 | 0.00503 | 0.122 | – |
| 2016–2017 | RM495 | 1 | 0.0015 | 0.104 | – | |
| Pooled | RM495 | 1 | 7.43E–04 | 0.151 | – |