TABLE 1.
Sequence data for the rhizosphere soil samples analyzed after treatments
| Samplea | Data before QCb
|
Data after QC |
Data after processing |
Data after alignment |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Size (bp) | No. of sequences | Sequence length (mean ± SD) (bp) | GC content (mean ± SD) (%) | No. of artificial duplicate reads | Size (bp) | No. of sequences | Sequence length (mean ± SD) (bp) | GC content(mean ± SD) (%) | No. of protein features predicted | No. of rRNA features predicted | No. of protein features identified | No. of rRNA features identified | |
| Cp4 | 1,939,891,250 | 12,070,719 | 161 ± 73 | 49 ± 11 | 8,391,961 | 526,025,382 | 2,945,816 | 179 ± 71 | 44 ± 10 | 1,342,578 | 18,398 | 387,527 | 2,577 |
| Cp8 | 2,618,758,280 | 15,575,330 | 168 ± 71 | 63 ± 12 | 1,832,282 | 2,270,368,498 | 13,083,355 | 174 ± 67 | 63 ± 10 | 11,042,146 | 36,758 | 4,547,525 | 10,755 |
| N2 | 978,960,789 | 5,558,478 | 176 ± 74 | 43 ± 11 | 2,399,030 | 553,971,710 | 2,892,203 | 192 ± 71 | 41 ± 9 | 1,164,182 | 13,662 | 418,097 | 3,170 |
| N1 | 1,694,792,733 | 9,687,815 | 175 ± 72 | 64 ± 12 | 1,078,716 | 1,474,813,072 | 8,198,530 | 180 ± 68 | 65 ± 10 | 7,188,585 | 18,817 | 3,057,707 | 6,303 |
| Cn0 | 1,430,407,056 | 7,834,687 | 183 ± 70 | 64 ± 11 | 788,921 | 1,257,716,569 | 6,780,803 | 185 ± 67 | 64 ± 10 | 6,123,837 | 17,813 | 2,612,059 | 5,936 |
a
Cp4, 4 tons/ha compost; Cp8, 8 tons/ha compost; N1, 60 kg/ha inorganic fertilizer; N2, 120 kg/ha inorganic fertilizer; Cn0, control.
b
QC, quality control; SD, standard deviation.