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. 2020 Oct 26;18:148. doi: 10.1186/s12915-020-00881-6

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — SNP density (SNPs/kb) in sequenced individuals. a Homozygous versus heterozygous SNPs for each accession, relative to the cv. Farga reference. Dot size correlates with the total amount of SNPs. All the cultivars are marked in green and var. sylvestris in blue. b SNP densities for the plastid and mitochondrial genomes. c Plot showing the relative position and identity of plastid SNPs compared to the cv. Farga (reference genome). Bars on the bottom show the main plastid haplotypes of the individuals as described by Besnard et al. [17, 44]