Table 2.
Gene ID, annotation, number of peptides per protein, protein score, and Label Free Quantitation (LFQ) averages across the three biological replicates of each tissue type. Tissues are leaf blade (LB), tiller initiation (TI), spike initiation (SI), ovary (OV) before anthesis, and three progressive kernel development stages of five, ten, and fifteen days after anthesis, named as 5DAA, 10DAA, and 15DAA. FDR for protein identification was set to 1%.
| Gene ID | Annotation | Unique + razor peptide counts | Protein score | LB | TI | SI | OV | 5 DAA | 10 DAA | 15 DAA |
|---|---|---|---|---|---|---|---|---|---|---|
| TraesCS4A01G485400 | Acid invertase 1 | 1 | 78.096 | 0 | 0 | 0 | 6507667 | 0 | 0 | 0 |
| TraesCS2B01G311900 | Cell wall invertase | 1 | 53.754 | 0 | 0 | 0 | 0 | 14909000 | 0 | 0 |
| TraesCS2A01G295400 | Cell wall invertase | 12 | 7969 | 0 | 0 | 0 | 0 | 697653333 | 285276667 | 0 |
| TraesCS4D01G323800 | Expansin-like protein | 1 | 7589 | 0 | 0 | 0 | 0 | 15423667 | 0 | 0 |
| TraesCS3D01G338600 | Expansin | 2 | 1501 | 0 | 0 | 0 | 101763333 | 0 | 0 | 0 |
| TraesCS1D01G215400 | Expansin protein | 5 | 8271 | 0 | 0 | 0 | 0 | 141236667 | 48413333 | 0 |
| TraesCS4B01G327100 | Expansin-like protein | 4 | 8723 | 0 | 0 | 0 | 0 | 212326667 | 341146667 | 107060000 |
| TraesCS2D01G361800 | Proliferating cell nuclear antigen | 13 | 2609 | 421443333 | 4605166667 | 7952966667 | 2081900000 | 688806667 | 513666667 | 353870000 |
| TraesCS4D01G267800 | Cell division cycle protein 48-like protein | 30 | 9358 | 0 | 199080667 | 1234366667 | 325096667 | 1356760000 | 397300000 | 84037000 |
| TraesCS5D01G314000 | Cell division cycle 5-like protein | 7 | 6775 | 0 | 18002000 | 136700000 | 0 | 0 | 0 | 0 |
| TraesCS2D01G488700 | Cell division protein ftsZ | 7 | 7762 | 0 | 89712000 | 158176667 | 0 | 42246333 | 0 | 0 |
| TraesCS7B01G269000 | Cell division cycle and apoptosis regulator protein 1 | 2 | 1617 | 0 | 0 | 40253333 | 0 | 0 | 0 | 0 |
| TraesCS2D01G292200 | Cell division protein ftsZ | 3 | 132.01 | 0 | 0 | 0 | 0 | 78183000 | 137990000 | 32470667 |
| TraesCS1D01G453600 | Argonaute | 3 | 5092 | 0 | 0 | 14506000 | 0 | 0 | 0 | 0 |
| TraesCSU01G065300 | Argonaute | 2 | 7107 | 0 | 0 | 5056000 | 0 | 0 | 0 | 0 |
| TraesCS2B01G194200 | Sucrose synthase | 3 | 1739 | 0 | 0 | 0 | 0 | 368466667 | 906160000 | 2053586667 |
| TraesCS2A01G168200 | Sucrose synthase | 33 | 7356 | 0 | 9459000 | 0 | 283148667 | 2696286667 | 5025100000 | 8804000000 |
| TraesCS7A01G189000 | Starch synthase, chloroplastic/amyloplastic | 22 | 6148 | 0 | 0 | 0 | 0 | 1012010000 | 1363776667 | 517848000 |
| TraesCS7D01G064300 | Starch synthase, chloroplastic/amyloplastic | 23 | 9849 | 0 | 0 | 0 | 0 | 3469100000 | 5835333333 | 4703233333 |
| TraesCS5A01G464500 | Alpha-amylase | 12 | 7578 | 0 | 0 | 0 | 0 | 1219750000 | 845143333 | 753446667 |
| TraesCS7A01G383900 | Alpha-amylase | 15 | 6552 | 0 | 0 | 0 | 328546667 | 2520300000 | 1055736667 | 1090773333 |
| TraesCS2A01G215100 | Beta-amylase | 2 | 2004 | 0 | 0 | 0 | 0 | 71195000 | 0 | 0 |
| TraesCS4B01G393500 | Beta-amylase | 8 | 7526 | 0 | 0 | 0 | 0 | 24626000 | 516360000 | 5438866667 |
| TraesCSU01G032700 | Beta-amylase | 19 | 9394 | 0 | 0 | 0 | 0 | 105910000 | 4329770000 | 21142366667 |
| TraesCS7D01G083700 | Dimeric α-amylase inhibitor | 3 | 217.02 | 0 | 0 | 0 | 0 | 311396667 | 4266500000 | 8435500000 |
| TraesCS3B01G111200 | Dimeric α-amylase inhibitor | 6 | 3125 | 0 | 0 | 0 | 0 | 1055233333 | 11218333333 | 40279333333 |
| TraesCS7B01G072000 | Alpha-amylase inhibitor protein | 1 | 3223 | 0 | 0 | 0 | 0 | 220766667 | 653893333 | 6300433333 |
| TraesCS7D01G168000 | Alpha-amylase inhibitor protein | 4 | 6383 | 0 | 0 | 0 | 0 | 66746667 | 550763333 | 4586966667 |
| TraesCS5D01G004300 | Puroindoline-b | 3 | 6998 | 0 | 0 | 0 | 0 | 0 | 122886667 | 680096667 |
| TraesCS5D01G004000 | Grain softness protein | 3 | 8245 | 0 | 0 | 0 | 0 | 0 | 2837043333 | 7778266667 |
| TraesCS5A01G003300 | Grain softness protein | 4 | 9358 | 0 | 0 | 0 | 0 | 105343667 | 3060623333 | 9518133333 |
| TraesCS5B01G003500 | Grain softness protein | 1 | 117.04 | 0 | 0 | 0 | 0 | 0 | 0 | 29034000 |
| TraesCS1A01G317500 | High-molecular-weight glutenin subunit | 2 | 171.92 | 0 | 0 | 0 | 0 | 0 | 64856667 | 1380400000 |
| TraesCS1B01G330000 | High-molecular-weight glutenin subunit | 2 | 156.81 | 0 | 0 | 0 | 0 | 0 | 61260000 | 1118073333 |
| TraesCS1D01G317300 | High-molecular-weight glutenin subunit | 6 | 8697 | 0 | 0 | 0 | 0 | 0 | 886550000 | 3685733333 |
| TraesCS1A01G008000 | Low-molecular-weight glutenin subunit | 2 | 2848 | 0 | 0 | 0 | 0 | 236596667 | 1644000000 | 10351166667 |
| TraesCS1B01G013500 | Low-molecular-weight glutenin subunit | 5 | 2087 | 0 | 0 | 0 | 0 | 99570333 | 4375070000 | 21306666667 |
| TraesCS1D01G000200 | Low-molecular-weight glutenin subunit | 4 | 2612 | 0 | 0 | 0 | 0 | 143736667 | 3398666667 | 22579000000 |
| TraesCS6A01G049800 | Alpha-gliadin | 1 | 78 | 0 | 0 | 0 | 0 | 0 | 0 | 673000000 |
| TraesCS1A01G007700 | Gamma-gliadin | 3 | 7406 | 0 | 0 | 0 | 0 | 33373333 | 1993100000 | 14268666667 |
| TraesCS7D01G031700 | Gliadin-like avenin | 5 | 3365 | 0 | 0 | 0 | 0 | 71090000 | 562143333 | 3430333333 |
| TraesCS1A01G066100 | 11S globulin seed storage protein | 2 | 3002 | 0 | 0 | 0 | 0 | 0 | 62060000 | 0 |
| TraesCS1B01G059000 | 11S globulin seed storage protein 2 | 3 | 7785 | 0 | 0 | 0 | 110496667 | 0 | 194270000 | 125760000 |
| TraesCS1D01G067100 | 11S globulin seed storage protein | 16 | 9858 | 0 | 0 | 0 | 0 | 57656667 | 2631383333 | 1741700000 |
| TraesCS5A01G432100 | Globulin-1 | 7 | 8313 | 0 | 0 | 0 | 0 | 0 | 0 | 432464000 |
| TraesCS5B01G434100 | Globulin-1 | 3 | 6876 | 0 | 0 | 0 | 0 | 0 | 0 | 310840000 |
| TraesCS5D01G440000 | Globulin-1 | 12 | 6635 | 0 | 0 | 0 | 0 | 0 | 36393333 | 999953333 |