Table 3:
Number and subtype of analyzed plaques from each BALF sample of each pig
| Group | Pig number | Total plaque sequenced | Major subtype | Plaques with major subtype | Genomes mixed with |
|---|---|---|---|---|---|
| Original challenge | M25 | 2 | H1N1 | 2/2 | - |
| M30 | 4 | H1N2v | 4/4 | - | |
| M33 | 6 | H1N2 | 6/6 | - | |
| M31 | 2 | H3N2r | 2/2 | - | |
| M27 | 2 | H3N2 | 2/2 | - | |
| Primary contact | M26 | 8 | H1N2v | 8/8 | - |
| M29 | 12 | H1N2v | 8/12 | - | |
| H3N2r | 2/12 | - | |||
| H1N2v | 1/12 | H3N2r PB2 PB1 PA NP NA M NS | |||
| H1N2v | 1/12 | H3N2r PB1 | |||
| M28 | 8 | H3N2r | 8/8 | - | |
| M32 | 10 | H1N2v | 6/10 | ||
| 1/10 | H3N2r PB2 PB1 PA NP M NS | ||||
| 1/10 | H3N2r PB1 NP | ||||
| 2/10 | H3N2r M | ||||
| Secondary contact | M34 | 6 | H1N2v | 3/6 | - |
| 2/6 | H3N2r NS | ||||
| 1/6 | H3N2 HA | ||||
| M35 | 8 | H1N2v | 8/8 | - | |
| M36 | 6 | H1N2v | 5/6 | - | |
| 1/6 | H3N2r PB2, NA, M, NS | ||||