| CDS | Coding sequences |
| GIs | Genomic islands |
| IS | Insertion sequences |
| MGEs | Mobile genetic elements |
| MLST | Multi-locus sequence type |
| MLVA | Multiple loci variable number of tandem repeats |
| NAO | North Atlantic Ocean |
| PFGE | Pulse-field gel electrophoresis |
| SARs | shared anomalous region |
| SNPs | Single nucleotide polymorphisms |
| ST | Sequence type (ST) |
| TR | Tandem repeats |
| VNTR | Variable number of tandem repeats |
| WGS | Whole-genome sequencing |