Table 1.
The values of the RD (Relative Distance) parameter for proteins under study.
| PDB ID | RD—LS | RD—LS after Fragment Selection/Elimination |
RD—ES | RD—ES after Fragment Selection/Elimination |
||
|---|---|---|---|---|---|---|
| 2CYU | 0.638 | 3-helix system | 0.493 | 0.540 | 18–23 | 0.431 |
| 2L6Q | 0.473 | 0.595 | 7–10,21–26 | 0.488 | ||
| 2L6R | 0.477 | 34–37 eliminated | 0.462 | 0.439 | ||
| 1BBL | 0.556 | 12–33 selected | 0.349 | |||
| 38–48 selected | 0.311 | |||||
| 2WXC | 0.382 | 0.525 | 165-C-term | 0.441 | ||
| 2A3D | 0.580 | 21–24 eliminated | 0.474 | 0.710 | 28–45 selected | 0.474 |
| 2F21 | 0.402 | 0.761 | ||||
| 1–49 selected | 0.520 | 0.657 | ||||
| 50–163 selected | 0.310 | 0.697 | ||||
| 2P6J | 0.298 | 0.504 | helix 5–17 | |||
ES (early, limited conformational sub-space) and LS (late stage, structure available in PDB) forms, respectively. Selected: status of the given fragment showing the local accordance; Eliminated: the RD value after elimination of a given fragment; Helix orientation: only the re-orientation of a given helix expected for lowering the RD value; Values in bold: structure with RD above 0.5.