PTC |
peptidyl transferase center |
FDA |
U.S. Food and Drug Administration |
cryo-EM |
cryogenic electron microscopy |
NMR |
nuclear magnetic resonance |
rf |
radiofrequency |
FID |
free induction decay |
FT |
Fourier transformation |
MD |
molecular dynamics |
NPET |
nascent peptide exit tunnel |
MABP-1 |
macrolide antibiotic binding protein-1 |
SEM |
scanning electron microscopy |
SPA |
single-particle analysis |
cryo-ET |
cryogenic electron tomography |
ErmBL |
erythromycin resistance methyltransferase B leader peptide |
ErmCL |
erythromycin resistance methyltransferase C leader peptide |
ermaa-tRNA |
erythromycin resistance methyltransferase geneaminoacyl-tRNA |
p-tRNA |
peptidyl-tRNA |
TnaCMsrE |
tryptophanase leader peptide |
RSF |
macrolide-streptogramin B resistance proteinribosomal silencing factor |
ABC |
ATP-binding cassette |
NOE |
nuclear Overhauser effect |
STD |
saturation transfer difference |
trNOESY |
transferred nuclear Overhauser effect spectroscopy |
DOSY |
diffusion-ordered NMR spectroscopy |
PREs |
paramagnetic relaxation enhancements |
ROESY |
rotating frame nuclear Overhauser effect spectroscopy |
SDS |
sodium dodecylsulphate |
DPC |
dodecylphosphocholine |
BSA |
bovine serum albumin |
MRSA |
methicillin-resistant Staphylococcus aureus
|
MAS |
magic angle spinning |
DOPC |
dioleoylphosphatidylcholine |
ESR |
electron spin resonance |
DMPC |
1,2-dimyristoyl-sn-glycero-3-phosphocholine |
DMPG |
1,2-dimyristoyl-sn-glycero-3-phosphorylglycerol |
SAR |
structure-activity relationship |
RDC |
residual dipolar couplings |
DMS |
dimethyl sulfate |
CMCT |
1-cyclohexyl-3-(2-morpholinoethyl) carbodiimide metho-p-toluene sulfonate |
F |
fluorophore |
FRET |
Förster resonance energy transfer |
QM |
quantum mechanical |
AMBER |
Assisted Model Building and Energy Refinement |
pBLCLZα |
erythromycin-inducible ermC-β-galactosidase |
CHARMM |
Chemistry at HARvard Macromolecular Mechanics |
PES |
potential energy surface |
ffTK |
force field toolkit |
VMD |
variable molecular dynamics |
GCMC |
grand canonical Monte Carlo |
MMFF |
Merck Molecular Force Field |
MOE |
MOELowModeMD |
MC |
MacroModel |