Table 4.
Single nucleotide polymorphism (SNP) statistics of each sample.
| Samples | SNP Number | Genic SNP | Intergenic SNP | Transition | Transversion | Heterozygosity |
|---|---|---|---|---|---|---|
| BE17B1 | 483,071 | 442,220 | 40,851 | 71.88% | 28.12% | 5.15% |
| BE17B2 | 533,462 | 479,697 | 53,765 | 71.91% | 28.09% | 5.18% |
| BE17B3 | 459,298 | 410,856 | 48,442 | 71.94% | 28.06% | 5.03% |
| BE17L1 | 444,914 | 405,784 | 39,130 | 72.19% | 27.81% | 5.32% |
| BE17L2 | 530,400 | 482,360 | 48,040 | 71.78% | 28.22% | 5.49% |
| BE17L3 | 458,580 | 416,890 | 41,690 | 72.03% | 27.97% | 5.09% |
| BE21B1 | 431,604 | 387,058 | 44,546 | 72.05% | 27.95% | 4.92% |
| BE21B2 | 468,195 | 420,675 | 47,520 | 71.82% | 28.18% | 4.96% |
| BE21B3 | 440,935 | 395,737 | 45,198 | 71.80% | 28.20% | 4.73% |
| BE21L1 | 437,821 | 400,429 | 37,392 | 72.14% | 27.86% | 5.25% |
| BE21L2 | 389,009 | 356,065 | 32,944 | 72.51% | 27.49% | 5.24% |
| BE21L3 | 347,547 | 315,990 | 31,557 | 72.68% | 27.32% | 5.79% |
| BE27B1 | 536,317 | 492,673 | 43,644 | 71.70% | 28.30% | 5.22% |
| BE27B2 | 634,028 | 574,484 | 59,544 | 71.12% | 28.88% | 4.74% |
| BE27B3 | 542,335 | 494,968 | 47,367 | 71.56% | 28.44% | 4.88% |
| BE27L1 | 406,931 | 374,739 | 32,192 | 72.26% | 27.74% | 4.27% |
| BE27L2 | 412,229 | 379,360 | 32,869 | 72.25% | 27.75% | 5.59% |
| BE27L3 | 446,540 | 410,485 | 36,055 | 71.98% | 28.02% | 5.50% |
| BE31B1 | 463,381 | 425,359 | 38,022 | 71.92% | 28.08% | 5.23% |
| BE31B2 | 475,408 | 426,377 | 49,031 | 71.77% | 28.23% | 5.28% |
| BE31B3 | 437,040 | 398,822 | 38,218 | 71.91% | 28.09% | 5.40% |
| BE31L1 | 293,728 | 264,407 | 29,321 | 72.66% | 27.34% | 5.07% |
| BE31L2 | 290,393 | 261,387 | 29,006 | 72.68% | 27.32% | 4.31% |
| BE31L3 | 356,589 | 317,875 | 38,714 | 72.17% | 27.83% | 5.23% |
| BE34B1 | 353,066 | 320,045 | 33,021 | 72.24% | 27.76% | 5.03% |
| BE34B2 | 66,777 | 60,706 | 6071 | 74.87% | 25.13% | 47.28% |
| BE34B3 | 466,221 | 416,752 | 49,469 | 71.79% | 28.21% | 4.87% |
| BE34L1 | 401,531 | 359,502 | 42,029 | 71.91% | 28.09% | 5.05% |
| BE34L2 | 347,704 | 312,392 | 35,312 | 72.09% | 27.91% | 5.00% |
| BE34L3 | 326,042 | 295,401 | 30,641 | 72.38% | 27.62% | 5.59% |
| BM6B1 | 76,822 | 69,735 | 7087 | 74.74% | 25.26% | 42.54% |
| BM6B2 | 76,472 | 70,083 | 6389 | 74.82% | 25.18% | 40.16% |
| BM6B3 | 114,505 | 104,733 | 9772 | 73.88% | 26.12% | 38.46% |
| BM6L1 | 23,381 | 20,572 | 2809 | 76.34% | 23.66% | 48.09% |
| BM6L2 | 66,117 | 60,659 | 5458 | 75.23% | 24.77% | 44.45% |
| BM6L3 | 85,270 | 77,902 | 7368 | 74.24% | 25.76% | 40.48% |
SNP Number: Total numbers of SNPs; Genic SNP: Total numbers of SNPs in the genic region; Intergenic SNP: Total numbers of SNPs between genes; Transition: The percentage that the transition-type SNP accounts for all SNP locis; Transversion: The percentage that the transversion-type SNP loci accounts for all SNP sites; Heterozygosity: The percentage that the heterozygous SNPs account for all SNPs.