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. 2020 Jun 2;124(26):5338–5349. doi: 10.1021/acs.jpcb.0c02009

Table 2. Correlation between the Experimental Binding Free Energy ΔGexp with the Rupture Force Fmax, Pulling Work Wpull, Rupture Time tmax, Binding ΔGbind and Unbinding ΔGunbind Barriers, and Jarzynski’s Binding Free Energy ΔGneqJar, Obtained in the SMD Simulation for Six Complexesa.

  thrombin factor Xa β-lactamase HIV-1 MCL-1 CDK-2
Fmax 0.81 0.78 0.82 0.64 0.80 0.66
Wpull 0.84 0.74 0.84 0.68 0.79 0.73
ln(tmax) 0.75 0.75 0.84 0.70 0.83 0.61
ΔGunbind 0.79 0.76 0.80 0.58 0.78 0.69
ΔGbind 0.81 0.77 0.83 0.63 0.77 0.68
ΔGneqJar 0.86 0.83 0.89 0.80 0.83 0.81
a

Results for β-lactamase were taken from Truong et al and Li.32