TABLE 3.

The enriched functions of the 15 genes from tumor tissues, the 11 genes from adjacent tissues, and the combined 26 genes using GATHER.

		Function	# Genes	Genes	p value	Bayes factor
The 15 genes from tumor	Gene Ontology	GO:0016043: cell organization and biogenesis	3	HIST1H4G NPHP1 SOCS4	0.0004	4
		GO:0006996: organelle organization and biogenesis	2	HIST1H4G NPHP1	0.006	2
		V$HEN1_02: HEN1	2	NPHP1 SOCS4	0.0003	4
	TRANSFAC	V$NFKB_Q6: NF-kappaB	3	DOCK9 NPHP1 SOCS4	0.002	3
		V$HNF1_Q6	2	NPHP1 SOCS4	0.004	2
The 11 genes from adjacent	KEGG Pathway	hsa04060: Cytokine-cytokine receptor interaction	1	TNFRSF14	0.002	2
	TRANSFAC	V$USF_01: upstream stimulating factor	4	ATF3 CREB5 TNFRSF14 XPO1	<0.0001	7
		V$MYC_Q2	4	ATF3 CREB5 TNFRSF14 XPO1	0.0002	5
		V$NMYC_01: N-Myc	4	ATF3 CREB5 TNFRSF14 XPO1	0.0004	4
		V$MYCMAX_02: c-Myc:Max heterodimer	4	ATF3 CREB5 TNFRSF14 XPO1	0.001	3
		V$AML_Q6	3	ATF3 CREB5 TNFRSF14	0.002	2
		V$SRF_Q6: serum response factor	2	ATF3 CREB5	0.003	2
Combined 26 genes	TRANSFAC	V$NFKB_Q6: NF-kappaB	5	CREB5 DOCK9 NPHP1 SOCS4 XPO1	0.0008	3