Figure 6.

Phylogenetic trees for the identified five viruses and a viroid. For the construction of phylogenetic trees, we selected five viruses, including STV (A), PMMoV (B), ToMV (C), TMGMV (D), and AYVCNV (E), and a viroid PCFVd (F), in which genome sequences were assembled by RNA-Seq. Assembled viral genome sequences, as well as matched known viral genome sequences from GenBank, were subjected to the construction of phylogenetic trees. Phylogenetic trees were constructed using the MEGA7 program using the Maximum Likelihood method with a bootstrap of 1000 replicates. The identified viral isolates from this study were marked by the gray color.