Table 2.
Differentially expressed genes in gene clusters.
| Cluster | Locus Tags | Cholesterol | LCA | LCA/Cholesterol | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| I | Ave | Max | D | I | Ave | Max | D | I | Ave | Max | D | ||
| A | KR76_14160-KR76_14505 | 23 | 50 | 226 | 0 | 28 | 40 | 108 | 0 | 0 | 0 | ||
| B | KR76_12190-KR76_12345 | 16 | 14 | 38 | 0 | 19 | 17 | 34 | 0 | 0 | 0 | ||
| C | KR76_25015- KR76_25200 | 2 | 9 | 13 | 0 | 9 | 13 | 65 | 0 | 2 | 5 | 5 | 0 |
| D | KR76_27035-KR76_27130 | 0 | 0 | 1 | 8 | 8 | 1 | 1 | 8 | 8 | 0 | ||
| E | KR76_17985-KR76_18075 | 0 | 1 | 15 | 25 | 44 | 0 | 17 | 31 | 58 | 0 | ||
| Out of clusters | 86 | 19 | 84 | 20 | 24 | 19 | |||||||
| Total | 127 | 20 | 156 | 21 | 44 | 19 | |||||||
Cluster: cluster of genes to which the gene is assigned. Locus_tags: range of genes locus tags that are included in the cluster. Cholesterol: number of genes changing expression in response to cholesterol (in comparison with the control) with more than threefold changes and q-value less than 0.05. LCA: number of genes changing expression in response to LCA (in comparison with the control) with more than threefold changes and q-value less than 0.05. LCA/Cholesterol: number of genes changing expression in response to LCA in comparison with cholesterol with more than threefold changes and q-value less than 0.05. I: the number of genes that significantly (more than 3 times with q-value < 0.01) increased their expression. Ave: the average level of induction among the genes that significantly increased their expression in the cluster. Max: the maximum level of induction. D: the number of genes that significantly (more than 3 times with q-value < 0.01) reduced their expression.