| Response variables |
(A) Sampling: bronze |
Best data available; municipalities, local governments, and states choose who to test. Positive tests only reported |
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(B) Identification: gold |
Assuming best practices in testing and reporting |
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(C) Spatial accuracy: bronze |
County assignments provide a rough georeference for each record, but do not precisely describe where transmission of the virus occurred. Spatial accuracy unknown. Occurrences limited to identifiable county level localities |
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(D) Environmental extent: deficient |
Limiting the study area to the continental U.S. is unlikely to adequately test environmental boundaries |
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(E) Geographic extent: bronze |
Study area to include current range in the U.S. |
| Predictor variables |
(A) Selection of candidates: bronze/deficient |
Unclear and not well documented correlations between SARS-CoV-2 transmission and climate. At best, distal variables with weak, indirect control on the distribution |
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(B) Spatial and temporal resolution: deficient |
Variables sampled from a 2.5 arcminute grid for all cells within 5km of each occurrence point. Mean value used for modeling. Monthly climate averages as predictors for end of March occurrence data |
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(C) Uncertainty: bronze |
Temporal and spatial uncertainty in occurrence data has unquantified potential effects on the model output. |
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(A) Model Complexity: silver |
ENMeval for model testing and selection (maximize testing AUC and minimize AICc in the case of ties) using internal cross validation through the block resampling method |
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(B) Treatment of response bias: silver |
Internal cross validation to evaluate bias effects in different models |
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(C) Treatment of collinearity: bronze |
“Approximate methods are applied” — Predictor variables hand selected from monthly climate data available to avoid collinearity (i.e., used only Tmax and not Tavg or Tmin) |
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(D) Uncertainty: bronze |
Multiple Maxent model parameters tested, but only the optimal model presented |
| Model evaluation |
(A) Evaluation of model assumptions: gold/silver |
Select robust models from all tested models with ENMeval |
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(B) Evaluation of model outputs: silver |
Evaluated against multiple, non-independent, geographically structured sub-samples |
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(C) Measures of model performance: silver |
Suite of model performance metrics performed via ENMeval |
| Summary |
Mode of the scores: bronze |
Model building and testing is generally robust, but data and geographic scope are incomplete at this time |