Table 1. Naming of different haplotypes.
| [27] | mutations | new Nextstrain | pang. | amino acid change |
|---|---|---|---|---|
| A2 | C241T, C3037T, A23403G | 19A/C241T/C3037T/A23403G | B | D614G in S |
| A2a | A2 + C14408T | 19A/C241T/C3037T.20A | B.1 | A2 + P4715L in Orf1ab |
| A2a1 | A2a + GGG28881AAC | 19A/C241T/C3037T.20A.20B | B.1.1 | A2a + R203K + G204R in N |
| A2a2 | A2a + G25563T | 19A/C241T/C3037T.20A/G25563T | B.1 | A2a + Q57H in Orf3a |
| A2a2a | A2a2 + C1059T | 19A/C241T/C3037T.20A.20C | B.1 | A2a2 + T265I in Orf1a |
List of relevant haplotypes with their definition in terms of mutations as well as their new Nextstrain label. We note that both the reference string used and all the haplotypes listed have the four mutations specified as haplotype A in [27]. We therefore do not list those. The second to last column is the label for the currently identified pangolin lineage clades they are included in. The last column gives the corresponding amino acid changes and the genes they occur in.