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. 2020 Oct 16;11:548737. doi: 10.3389/fmicb.2020.548737

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Copyright © 2020 Mammeri, Obregón, Chevillot, Polack, Julien, Pollet, Cabezas-Cruz and Adjou.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Taxa (16S) contribution to short-chain fatty acid (SCFA) biosynthesis pathways (PICRUSt2-predicted EC metagenome) affected by Cryptosporidium parvum infection in goat kid microbiomes. Chord diagrams showing the inter-relationships between taxa and SCFA pathways and these relationships compared between uninfected and infected goat kids for (A) PWY-5676 (fermentation of acetyl-CoA to butanoate II) at 5 dpi and (B) PWY-5677 (fermentation succinate to butanoate) at 15 dpi. Node segments along a circle represent taxa or the analyzed pathways in each group (infected and uninfected). The node size indicates the abundance (feature count) of contributing taxa and pathways. Arcs indicate the connections between pathways and taxa, which are represented proportionally by the size of each arc.